; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036668 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036668
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationscaffold5:47740674..47742504
RNA-Seq ExpressionSpg036668
SyntenySpg036668
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572904.1 Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.9e-4858.17Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+R+GS  QPS+LSIFQ IRFMSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD
        LDG                                                                      QSG GLD+GD  +DDFLGGGK  DED+
Subjt:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD

Query:  NDDYAKRA
        NDDYAKRA
Subjt:  NDDYAKRA

XP_022137596.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]3.0e-4561.69Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSS TRIGSDL+P   SIFQTIRFMSSSKVFVGGLSYGTDDQ LREAFTKYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQS-------------------------------GSGLDA-------------------------------GDTNQDDFLGGGKYRDEDD-NDDYAKR
        LDGQ                                G G +A                               GD NQDDFLGGGKYRDEDD NDDYAKR
Subjt:  LDGQS-------------------------------GSGLDA-------------------------------GDTNQDDFLGGGKYRDEDD-NDDYAKR

Query:  A
        A
Subjt:  A

XP_022954706.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]6.4e-4858.65Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+RIGS  QPS+LSIFQ IRFMSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD
        LDG                                                                      QSG GLD+GD  +DDFLGGGK  DED+
Subjt:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD

Query:  NDDYAKRA
        NDDYAKRA
Subjt:  NDDYAKRA

XP_022994220.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]3.8e-4858.37Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+RIGS  QPS+LSIFQ IR MSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG-----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDED
        LDG                                                                       QSG GLD+GD  +DDFLGGGKY DED
Subjt:  LDG-----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDED

Query:  DNDDYAKRA
        +NDDYAKRA
Subjt:  DNDDYAKRA

XP_023541373.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]1.3e-4860.4Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+RIGS  QPS+LSIFQ IRFMSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG----------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDDNDDYAK
        LDG                                                                QSG GLD+GD  +DDFLGGGK  DED+NDDYAK
Subjt:  LDG----------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDDNDDYAK

Query:  RA
        RA
Subjt:  RA

TrEMBL top hitse value%identityAlignment
A0A6J1C734 glycine-rich RNA-binding protein 4, mitochondrial-like1.4e-4561.69Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSS TRIGSDL+P   SIFQTIRFMSSSKVFVGGLSYGTDDQ LREAFTKYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQS-------------------------------GSGLDA-------------------------------GDTNQDDFLGGGKYRDEDD-NDDYAKR
        LDGQ                                G G +A                               GD NQDDFLGGGKYRDEDD NDDYAKR
Subjt:  LDGQS-------------------------------GSGLDA-------------------------------GDTNQDDFLGGGKYRDEDD-NDDYAKR

Query:  A
        A
Subjt:  A

A0A6J1ECL7 glycine-rich RNA-binding protein 3, mitochondrial-like7.4e-4269.39Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFS+SSA+ I SDLQPSKLSIFQ+IR MSSSKVFVGGLSYGTDDQ L+EAF KYGEVVEARVI DRDTGRSRGFGFVTFT NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQ-----------------SGSGLDAGDT---NQDDFLGGGKYRD
        LDGQ                  G G D G +       + GGG Y D
Subjt:  LDGQ-----------------SGSGLDAGDT---NQDDFLGGGKYRD

A0A6J1GRM7 glycine-rich RNA-binding protein 4, mitochondrial-like3.1e-4858.65Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+RIGS  QPS+LSIFQ IRFMSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD
        LDG                                                                      QSG GLD+GD  +DDFLGGGK  DED+
Subjt:  LDG----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDEDD

Query:  NDDYAKRA
        NDDYAKRA
Subjt:  NDDYAKRA

A0A6J1I6W1 glycine-rich RNA-binding protein 3, mitochondrial1.6e-4169.18Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGK+F +SSA+ I SDLQPSKLSIFQ+IR MSSSKVFVGGLSYGTDDQ LREAF KYGEVVEARVI DRDTGRSRGFGFVTFT NEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQS----------------GSGLDAGDT---NQDDFLGGGKYRD
        LDGQ                 G G D G +       + GGG Y D
Subjt:  LDGQS----------------GSGLDAGDT---NQDDFLGGGKYRD

A0A6J1K0M4 glycine-rich RNA-binding protein 4, mitochondrial-like1.8e-4858.37Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVGKIFSQSSA+RIGS  QPS+LSIFQ IR MSSSKVFVGGLSYGTDD  LREAFTKYGEVVEARVILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDG-----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDED
        LDG                                                                       QSG GLD+GD  +DDFLGGGKY DED
Subjt:  LDG-----------------------------------------------------------------------QSGSGLDAGDTNQDDFLGGGKYRDED

Query:  DNDDYAKRA
        +NDDYAKRA
Subjt:  DNDDYAKRA

SwissProt top hitse value%identityAlignment
Q43472 Glycine-rich RNA-binding protein blt8011.1e-1547.13Show/hide
Query:  KVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQALDGQ--SGSGLDAGDTNQDDFLGGGKY
        + FVGGL + TDDQ L+ AF+KYG+V+++++I DR+TGRSRGFGFVTF  +E    AI+A++GQ   G  +   +       GGG +
Subjt:  KVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQALDGQ--SGSGLDAGDTNQDDFLGGGKY

Q9C909 Glycine-rich RNA-binding protein 5, mitochondrial6.9e-2963.89Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVG++FSQ+S+    S       S+ Q+IR MSSSK+FVGG+SY TD+ GLREAF+KYGEVV+A++I+DR+TGRSRGF FVTFT  EEAS+A+Q 
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG
        LDGQ   G
Subjt:  LDGQSGSG

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.3e-3056.92Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSK G I  Q++  ++ + +  S  S+FQ IR MSSSK+F+GG++Y  D+  LREAFTKYGEVV+ RVILDR+TGRSRGFGFVTFT +E ASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSGL-----DAGDTNQDDFLGGGKY
        LDG+   G       A D       GGG Y
Subjt:  LDGQSGSGL-----DAGDTNQDDFLGGGKY

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial2.9e-1942.86Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAF +K+  I  Q     +         S+  ++R+M SSK+FVGGLS+GTDD  L++AFT +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG--------LDAGDTNQDDFLGGGKY
        +DG+  +G         +     +  F GGG Y
Subjt:  LDGQSGSG--------LDAGDTNQDDFLGGGKY

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial6.5e-1947.22Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  ++R M S+K+F+GGLS+GTDD  LR+AF  +G+VV+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG
        +DG+  +G
Subjt:  LDGQSGSG

Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 54.9e-3063.89Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSKVG++FSQ+S+    S       S+ Q+IR MSSSK+FVGG+SY TD+ GLREAF+KYGEVV+A++I+DR+TGRSRGF FVTFT  EEAS+A+Q 
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG
        LDGQ   G
Subjt:  LDGQSGSG

AT3G23830.1 glycine-rich RNA-binding protein 42.1e-2042.86Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAF +K+  I  Q     +         S+  ++R+M SSK+FVGGLS+GTDD  L++AFT +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG--------LDAGDTNQDDFLGGGKY
        +DG+  +G         +     +  F GGG Y
Subjt:  LDGQSGSG--------LDAGDTNQDDFLGGGKY

AT3G23830.2 glycine-rich RNA-binding protein 42.1e-2042.86Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAF +K+  I  Q     +         S+  ++R+M SSK+FVGGLS+GTDD  L++AFT +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG--------LDAGDTNQDDFLGGGKY
        +DG+  +G         +     +  F GGG Y
Subjt:  LDGQSGSG--------LDAGDTNQDDFLGGGKY

AT4G13850.1 glycine-rich RNA-binding protein 24.6e-2047.22Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAF +K+G +  Q+    I S+      S+  ++R M S+K+F+GGLS+GTDD  LR+AF  +G+VV+A+VI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSG
        +DG+  +G
Subjt:  LDGQSGSG

AT5G61030.1 glycine-rich RNA-binding protein 39.0e-3256.92Show/hide
Query:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA
        MAFLSK G I  Q++  ++ + +  S  S+FQ IR MSSSK+F+GG++Y  D+  LREAFTKYGEVV+ RVILDR+TGRSRGFGFVTFT +E ASSAIQA
Subjt:  MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQA

Query:  LDGQSGSGL-----DAGDTNQDDFLGGGKY
        LDG+   G       A D       GGG Y
Subjt:  LDGQSGSGL-----DAGDTNQDDFLGGGKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTAGTAAAGTTGGAAAAATATTTAGTCAGAGTTCTGCAACAAGGATTGGTTCAGATTTGCAGCCTTCCAAGCTGTCTATCTTTCAAACTATTAGATTCAT
GTCAAGTTCGAAAGTATTTGTTGGAGGCCTTTCGTATGGTACTGATGACCAGGGTCTGAGGGAAGCGTTCACCAAGTATGGGGAAGTAGTTGAAGCGAGAGTCATATTGG
ATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCACCGGCAATGAAGAAGCCTCAAGTGCTATTCAAGCGCTTGATGGACAGAGTGGCAGTGGACTGGAC
GCTGGGGATACAAATCAGGATGATTTTTTGGGAGGAGGAAAGTATAGAGACGAGGATGACAACGATGACTATGCTAAAAGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTCTTAGTAAAGTTGGAAAAATATTTAGTCAGAGTTCTGCAACAAGGATTGGTTCAGATTTGCAGCCTTCCAAGCTGTCTATCTTTCAAACTATTAGATTCAT
GTCAAGTTCGAAAGTATTTGTTGGAGGCCTTTCGTATGGTACTGATGACCAGGGTCTGAGGGAAGCGTTCACCAAGTATGGGGAAGTAGTTGAAGCGAGAGTCATATTGG
ATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCACCGGCAATGAAGAAGCCTCAAGTGCTATTCAAGCGCTTGATGGACAGAGTGGCAGTGGACTGGAC
GCTGGGGATACAAATCAGGATGATTTTTTGGGAGGAGGAAAGTATAGAGACGAGGATGACAACGATGACTATGCTAAAAGGGCTTGA
Protein sequenceShow/hide protein sequence
MAFLSKVGKIFSQSSATRIGSDLQPSKLSIFQTIRFMSSSKVFVGGLSYGTDDQGLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFTGNEEASSAIQALDGQSGSGLD
AGDTNQDDFLGGGKYRDEDDNDDYAKRA