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Spg036692 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036692
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor PRE5-like
Genome locationscaffold5:48301349..48302042
RNA-Seq ExpressionSpg036692
SyntenySpg036692
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607436.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia]4.7e-2277.92Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVK
        MASSKF DD+IKNLVLKL +LLPQLN K  D+S V  AEIL+ETCD IKKL+RE+DDLSERLW+QLESMGVD EMVK
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVK

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]6.5e-2477.33Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEM
        MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSERLWKQL+SMGVDFEM
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.1e-2677.78Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL
        MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSERLWKQL+SMGVDFEMVKDLL+
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]7.5e-2882.5Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLL
        MASSK  DDE+KNLV KLQ+LLPQLN KP ++S VSA EIL+ETCDYIKKLQREVDDLSERLWKQL+SMG+DFEMVKDLL
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]6.3e-2779.52Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSA--VSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL
        MASSK ADD+++NLV KLQ+LLP LNRKPD++SA  VSA +IL+ETCDYIKKLQREVDDLSERLWKQL+SMGVD EMVKDL+L
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSA--VSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein3.6e-2882.5Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLL
        MASSK  DDE+KNLV KLQ+LLPQLN KP ++S VSA EIL+ETCDYIKKLQREVDDLSERLWKQL+SMG+DFEMVKDLL
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLL

A0A1S3B0J1 transcription factor PRE5-like5.2e-2777.78Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL
        MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSERLWKQL+SMGVDFEMVKDLL+
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL

A0A5A7SZP9 Transcription factor PRE5-like5.2e-2777.78Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL
        MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSERLWKQL+SMGVDFEMVKDLL+
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLL

A0A5D3BKI2 Transcription factor PRE5-like3.2e-2477.33Show/hide
Query:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEM
        MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSERLWKQL+SMGVDFEM
Subjt:  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEM

A0A5N5I0V3 Transcription factor PRE6-like1.2e-1259.26Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMG---VDFEMVKDLL
        +SK +DDEIK LVLKLQ LLPQL+     N+ VSA+ ILEETC YIK+L REV+DLS+RL + L+S G   VD E+++ LL
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMG---VDFEMVKDLL

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE41.6e-0945.12Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM-GVDFEMVKDLLL
        +S   D++I +LVL+L  LLP+L  NR+   +  VSA+ +L+ETC YI+ L +EVDDLSERL + LES       +++ LL+
Subjt:  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM-GVDFEMVKDLLL

Q8GW32 Transcription factor PRE67.8e-1254.55Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLES
        SS+ +DD+I +LV KLQ L+P+L R+  D   VSA+++L+ETC+YI+ L REVDDLS+RL + L S
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLES

Q9CA64 Transcription factor PRE32.5e-1053.33Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL
        +S+ ++D+I +L++KLQ LLP+L R    +  VSAA +L++TC+YI+ L REVDDLSERL
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE51.2e-0944.29Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVD
        +S+ +DD++ +LV KL+  LP+++ +   +  VSA+++L+ETC+YI+KL REVD+LS+RL + L+S+  D
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVD

Q9LXG5 Transcription factor PRE27.3e-1044.12Show/hide
Query:  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM
        +SS+ +DD+I +L+ KL+  +P++ +    N+ VSA+++L+ETC+YI+ L +E DDLS+RL + LES+
Subjt:  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.5e-1354.55Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLES
        SS+ +DD+I +LV KLQ L+P+L R+  D   VSA+++L+ETC+YI+ L REVDDLS+RL + L S
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLES

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.8e-1153.33Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL
        +S+ ++D+I +L++KLQ LLP+L R    +  VSAA +L++TC+YI+ L REVDDLSERL
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein8.8e-1144.29Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVD
        +S+ +DD++ +LV KL+  LP+++ +   +  VSA+++L+ETC+YI+KL REVD+LS+RL + L+S+  D
Subjt:  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVD

AT3G47710.1 BANQUO 31.2e-1045.12Show/hide
Query:  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM-GVDFEMVKDLLL
        +S   D++I +LVL+L  LLP+L  NR+   +  VSA+ +L+ETC YI+ L +EVDDLSERL + LES       +++ LL+
Subjt:  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM-GVDFEMVKDLLL

AT5G15160.1 BANQUO 25.2e-1144.12Show/hide
Query:  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM
        +SS+ +DD+I +L+ KL+  +P++ +    N+ VSA+++L+ETC+YI+ L +E DDLS+RL + LES+
Subjt:  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTTGCTGACGACGAGATTAAAAATCTAGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCGTAAGCCCGACGACAACTCTGCGGTGTCGGC
GGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGAATCAATGGGTGTTGACTTTG
AAATGGTTAAAGATCTTCTTCTCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCAAATTTGCTGACGACGAGATTAAAAATCTAGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCGTAAGCCCGACGACAACTCTGCGGTGTCGGC
GGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGAATCAATGGGTGTTGACTTTG
AAATGGTTAAAGATCTTCTTCTCACTTAA
Protein sequenceShow/hide protein sequence
MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLLT