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Spg036710 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036710
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnuclear factor Y, subunit B12
Genome locationscaffold5:47251180..47255433
RNA-Seq ExpressionSpg036710
SyntenySpg036710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08190.2 nuclear factor Y, subunit B123.1e-0443.64Show/hide
Query:  KMVGFGYYVQEVYAASERYHFEPMGSVRMKWSNAVLQFVWTEEEALPEQAENYAK
        +++GFG YV+EVYAA E++ +E M S R    N+  +   TEEEA  EQ   +A+
Subjt:  KMVGFGYYVQEVYAASERYHFEPMGSVRMKWSNAVLQFVWTEEEALPEQAENYAK
AT5G23090.4 nuclear factor Y, subunit B134.0e-0441.07Show/hide
Query:  KMVGFGYYVQEVYAASERYHFEPMGSVR-MKWSNAVLQFVWTEEEALPEQAENYAK
        +++GFG Y++EVYAA E++ +E M + R +KW+        TEEEA  EQ   +A+
Subjt:  KMVGFGYYVQEVYAASERYHFEPMGSVR-MKWSNAVLQFVWTEEEALPEQAENYAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCCTTTAAGTTCATCCCCTATCATTTGTGTTCACTACAAAGAGACATGAGCATCAACCATCTCTTACATTTGTGCATGGCTTCTACTAGTTGGATCTCTATTCT
CAAACGGTGTGGTATTTCCTGGTGCATGCCCACAGATATTGTTGATCTCTTCTTTCTATTACTCGAGAGCAGCTACTTCCGGGGAAAGATGGTTGGCTTTGGCTACTACG
TTCAGGAAGTTTATGCAGCATCTGAACGGTACCATTTCGAACCTATGGGTTCTGTGAGAATGAAGTGGAGCAATGCAGTATTGCAGTTTGTGTGGACCGAGGAAGAAGCA
TTGCCTGAGCAAGCAGAGAATTATGCAAAGACTTCGAAATATCTGTACGAAATCAGTTCTAGTTTCTGGTCTCTTCAATCTGCTCTTGATTTGTGCATTTCTGATCATGC
GCTGATTGAGCTCGAGTTACATCCTCCAGTTGAGATCCAACTACATCATTACAATGAGTTCTCATTTCATCATCGCACGGTCAAAGTTGAAATAAAGAAGAGTATGGGAG
TTTACAACTCATTGGCGTACATTTATGCTCAAGTTTTTTACTTTCTTGTTTTTGTCTCTTTCCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCCTTTAAGTTCATCCCCTATCATTTGTGTTCACTACAAAGAGACATGAGCATCAACCATCTCTTACATTTGTGCATGGCTTCTACTAGTTGGATCTCTATTCT
CAAACGGTGTGGTATTTCCTGGTGCATGCCCACAGATATTGTTGATCTCTTCTTTCTATTACTCGAGAGCAGCTACTTCCGGGGAAAGATGGTTGGCTTTGGCTACTACG
TTCAGGAAGTTTATGCAGCATCTGAACGGTACCATTTCGAACCTATGGGTTCTGTGAGAATGAAGTGGAGCAATGCAGTATTGCAGTTTGTGTGGACCGAGGAAGAAGCA
TTGCCTGAGCAAGCAGAGAATTATGCAAAGACTTCGAAATATCTGTACGAAATCAGTTCTAGTTTCTGGTCTCTTCAATCTGCTCTTGATTTGTGCATTTCTGATCATGC
GCTGATTGAGCTCGAGTTACATCCTCCAGTTGAGATCCAACTACATCATTACAATGAGTTCTCATTTCATCATCGCACGGTCAAAGTTGAAATAAAGAAGAGTATGGGAG
TTTACAACTCATTGGCGTACATTTATGCTCAAGTTTTTTACTTTCTTGTTTTTGTCTCTTTCCGTTGA
Protein sequenceShow/hide protein sequence
MYAFKFIPYHLCSLQRDMSINHLLHLCMASTSWISILKRCGISWCMPTDIVDLFFLLLESSYFRGKMVGFGYYVQEVYAASERYHFEPMGSVRMKWSNAVLQFVWTEEEA
LPEQAENYAKTSKYLYEISSSFWSLQSALDLCISDHALIELELHPPVEIQLHHYNEFSFHHRTVKVEIKKSMGVYNSLAYIYAQVFYFLVFVSFR