CuGenDBv2

Gene ID	Spg036817
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	scaffold5:48017456..48019275
RNA-Seq Expression	Spg036817
Synteny	Spg036817
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0005737 - cytoplasm (cellular component) GO:0009521 - photosystem (cellular component) GO:0043229 - intracellular organelle (cellular component) GO:0016168 - chlorophyll binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009239222.1 photosystem II 47 kDa protein [Pedicularis ishidoyana]

3.9e-24

53.72

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

YP_009475701.1 photosystem II 47 kDa protein [Pedicularis hallaisanensis]

5.2e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

YP_009751255.1 PsbB [Pedicularis longiflora]

5.2e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

YP_009751340.1 PsbB [Pedicularis muscicola]

5.2e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

YP_010128888.1 photosystem II CP47 chlorophyll apoprotein [Pedicularis dissecta]

5.2e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

TrEMBL top hits

e value

%identity

Alignment

A0A140F957 Photosystem II CP47 reaction center protein

1.9e-24

53.72

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

A0A343UZK8 Photosystem II CP47 reaction center protein

2.5e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

A0A6G7SDI9 Photosystem II CP47 reaction center protein

2.5e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

A0A6G7SE61 Photosystem II CP47 reaction center protein

2.5e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

A0A7T1TVM7 Photosystem II 47 kDa protein

2.5e-24

52.89

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ GE  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

SwissProt top hits

e value

%identity

Alignment

A9LYC6 Photosystem II CP47 reaction center protein

7.5e-26

85.94

Show/hide

Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE

Q06FP2 Photosystem II CP47 reaction center protein

7.5e-26

85.94

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE

Q06GX1 Photosystem II CP47 reaction center protein

5.7e-26

51.24

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH
        M+NGDGI VGWLGHP+F DKEG ELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE                 +  +  G     ++ G+  
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHH

Query:  RPKNRSARIDIGWSVFELNRS
          K  + R  +G  +FEL+R+
Subjt:  RPKNRSARIDIGWSVFELNRS

Q2QD63 Photosystem II CP47 reaction center protein

7.5e-26

85.94

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE

Q3V508 Photosystem II CP47 reaction center protein

7.5e-26

85.94

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE
        M+NGDGI VGWLGHPVF DKEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE

Arabidopsis top hits

e value

%identity

Alignment

AT5G56730.1 Insulinase (Peptidase family M16) protein

5.7e-05

62.5

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Query:  ENYYRLDRILRSYHSRIYTDDVGASFKALARG
        ENYY LDRI+R Y SR+Y  D+GAS K L  G
Subjt:  ENYYRLDRILRSYHSRIYTDDVGASFKALARG

ATCG00680.1 photosystem II reaction center protein B

2.0e-26

84.38

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Query:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE
        M+NGDGI VGWLGHPVF +KEGRELF RRMPT FETF VVLVDGD I+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVE

Sequences

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CDS sequence

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ATGAACAATGGGGATGGAATAGTTGTTGGGTGGTTAGGACACCCTGTTTTTATAGATAAAGAAGGGCGCGAACTTTTTGGACGTCGTATGCCGACCATTTTTGAAACATT
TACGGTTGTTTTAGTAGACGGAGACGAAATTCTTAGAGCCGATTTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACTGGAGAATTATTACAGGCTGGACAGGA
TTTTACGTAGCTACCATTCAAGGATATACACTGATGATGTTGGAGCTTCTTTTAAGGCGCTTGCTAGGGGTGAGCATCATAGACCGAAAAATCGATCCGCTCGAATCGAC
ATCGGTTGGTCGGTTTTTGAATTAAATCGGTCGGAGTCGGTATTTCCTATAGAAAAATCGACTGGTCGGTCGGTTGGTGAGCCCAAAAAGGCTCAAACCAACTAG

mRNA sequence

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Protein sequence

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MNNGDGIVVGWLGHPVFIDKEGRELFGRRMPTIFETFTVVLVDGDEILRADFPFRRAESKYSVELENYYRLDRILRSYHSRIYTDDVGASFKALARGEHHRPKNRSARID
IGWSVFELNRSESVFPIEKSTGRSVGEPKKAQTN

Spg036817 (gene) of Sponge gourd (cylindrica) v1 genome