; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036819 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036819
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationscaffold5:42798455..42799192
RNA-Seq ExpressionSpg036819
SyntenySpg036819
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056890.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa]2.4e-5048.96Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL
        M+N +EAL+ +LKK+ D EV  IPT  + N+T L+ +MA           L+    ++  PQ +          R+P        + P F+GTD+  WIL
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL

Query:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA
        KME YFE HHIDD A MMD I LCM+G+AL WFRC  N   PP SWDEFR +L+ RF +   +  +F+ L+QEGSV  YCS+FE LGALLP++   +LEA
Subjt:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA

Query:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        KFMNGLK E+R +VRML PK I +IM +ARL +  NNVALN
Subjt:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

KAE8652678.1 hypothetical protein Csa_013756 [Cucumis sativus]9.0e-5350.42Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILK
        M+N +EALE +LKK+ D EV  IP  + N T LL +MA L    +  + L+Q     + P                        + P F+GTD+  WILK
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILK

Query:  MEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAK
        ME YFE HHIDD A+MM+ I LCM+G+AL WFRC  N  NPP SW EFR +L+KRF +G  +  RFI LQQEGSV  YCS+FE LGALLP++  C++EAK
Subjt:  MEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAK

Query:  FMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        FMNGLK E+R EVRML  +GI +IM +ARL +  NNVA N
Subjt:  FMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

PWA91318.1 Ty3/gypsy retrotransposon protein [Artemisia annua]8.8e-2440.91Show/hide
Query:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGD--TMYGRFIALQQEGSVRNYC
        R  K P F+G DS  WI K+E YFE   I+   E +    LCM G+AL WFR     ++P  +W+  +  L +RF++    T+Y +F+A+ QEGS R Y 
Subjt:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGD--TMYGRFIALQQEGSVRNYC

Query:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD
        S FE L   L  I + ++E  F+ GLK E+RA VR++QP+G+   M+ A ++DD
Subjt:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD

XP_016900762.1 PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo]2.4e-5048.96Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL
        M+N +EAL+ +LKK+ D EV  IPT  + N+T L+ +MA           L+    ++  PQ +          R+P        + P F+GTD+  WIL
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL

Query:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA
        KME YFE HHIDD A MMD I LCM+G+AL WFRC  N   PP SWDEFR +L+ RF +   +  +F+ L+QEGSV  YCS+FE LGALLP++   +LEA
Subjt:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA

Query:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        KFMNGLK E+R +VRML PK I +IM +ARL +  NNVALN
Subjt:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

XP_042752301.1 uncharacterized protein LOC111913995 isoform X1 [Lactuca sativa]4.4e-2340.26Show/hide
Query:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFE--NGDTMYGRFIALQQEGSVRNYC
        R  K P F G D+  WI K+E +FE   I    + +   A+C+ G+AL WFR     ++P  SW+E +  L +RF+      +Y +F+A++QEGSVR+Y 
Subjt:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFE--NGDTMYGRFIALQQEGSVRNYC

Query:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD
        S FE L   L DIP+ +LE  F+NGLK + R+ VR+LQP  +   M  A ++D+
Subjt:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD

TrEMBL top hitse value%identityAlignment
A0A0A0LUB3 Retrotrans_gag domain-containing protein4.4e-5350.42Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILK
        M+N +EALE +LKK+ D EV  IP  + N T LL +MA L    +  + L+Q     + P                        + P F+GTD+  WILK
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILK

Query:  MEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAK
        ME YFE HHIDD A+MM+ I LCM+G+AL WFRC  N  NPP SW EFR +L+KRF +G  +  RFI LQQEGSV  YCS+FE LGALLP++  C++EAK
Subjt:  MEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAK

Query:  FMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        FMNGLK E+R EVRML  +GI +IM +ARL +  NNVA N
Subjt:  FMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

A0A1S4DXQ7 uncharacterized protein LOC1079910161.2e-5048.96Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL
        M+N +EAL+ +LKK+ D EV  IPT  + N+T L+ +MA           L+    ++  PQ +          R+P        + P F+GTD+  WIL
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL

Query:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA
        KME YFE HHIDD A MMD I LCM+G+AL WFRC  N   PP SWDEFR +L+ RF +   +  +F+ L+QEGSV  YCS+FE LGALLP++   +LEA
Subjt:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA

Query:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        KFMNGLK E+R +VRML PK I +IM +ARL +  NNVALN
Subjt:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

A0A2U1PZV9 Ty3/gypsy retrotransposon protein4.2e-2440.91Show/hide
Query:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGD--TMYGRFIALQQEGSVRNYC
        R  K P F+G DS  WI K+E YFE   I+   E +    LCM G+AL WFR     ++P  +W+  +  L +RF++    T+Y +F+A+ QEGS R Y 
Subjt:  RMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGD--TMYGRFIALQQEGSVRNYC

Query:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD
        S FE L   L  I + ++E  F+ GLK E+RA VR++QP+G+   M+ A ++DD
Subjt:  SQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD

A0A5D3BEL2 Ty3/gypsy retrotransposon protein3.6e-2330.22Show/hide
Query:  SKMKNRIEALEMELKKLSDEVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKE---------------------------Y
        ++++ R+E+ E E+  +  E+ K+P +E  +  L   M  +RL+ E  +  I    E    + S A  R+ E                            
Subjt:  SKMKNRIEALEMELKKLSDEVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKE---------------------------Y

Query:  QRLPESLARRMQKF-----PPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFEN--GDTMYGR
        +  P+  +    KF     P F G D  SW+ + E YF+ H + + +E M +  +C  G ALNW+R    R+    SW   +  L  RF++    T +GR
Subjt:  QRLPESLARRMQKF-----PPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFEN--GDTMYGR

Query:  FIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD
        F+ +QQE +V  Y + F+ L A L D+ D ++E  FM+GL   +RAEV + +PKG+ E+MR A+LV+D
Subjt:  FIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDD

A0A5D3BJD9 Aminoacyl-tRNA ligase1.2e-5048.96Show/hide
Query:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL
        M+N +EAL+ +LKK+ D EV  IPT  + N+T L+ +MA           L+    ++  PQ +          R+P        + P F+GTD+  WIL
Subjt:  MKNRIEALEMELKKLSD-EVQKIPTM-EKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWIL

Query:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA
        KME YFE HHIDD A MMD I LCM+G+AL WFRC  N   PP SWDEFR +L+ RF +   +  +F+ L+QEGSV  YCS+FE LGALLP++   +LEA
Subjt:  KMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEA

Query:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN
        KFMNGLK E+R +VRML PK I +IM +ARL +  NNVALN
Subjt:  KFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNVALN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29750.1 Eukaryotic aspartyl protease family protein2.8e-0437.31Show/hide
Query:  FIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIM-RKARLV
        +  +QQEGSVR+Y  +FE L      +P    E  F+ GL+  ++  VR L+P GI     R+A L+
Subjt:  FIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIM-RKARLV

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding1.7e-0928.8Show/hide
Query:  KEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFE
        K+    +  R  +  + L E+L R +  F               E YF  ++I +  E + I+   + G    W +  L +KN P SW EF+  + +  E
Subjt:  KEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILKMEWYFEFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFE

Query:  NGDTM----YGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNV
           TM       +  +QQEGSVR Y  +FE L      +P   LEA F+ GL+  ++  VR L+P GI ++M  A+ +++ N++
Subjt:  NGDTM----YGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRMLQPKGIEEIMRKARLVDDMNNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAGGGAGCAAAATGAAAAACCGAATCGAAGCATTGGAAATGGAGTTGAAGAAGCTTTCAGATGAAGTTCAGAAGATCCCAACAATGGAGAAAAACATCACGGC
TCTGTTAGAAGAAATGGCCCAGCTTCGGCTGCGCCAGGAAGCCACTGAGACATTGATCCAGAAAATGCAAGAGAAGAAGGAACCGCAGTCCAGTAAAGCGAAACGAAGAG
TAAAAGAATACCAACGCCTACCTGAATCCCTAGCCCGCCGAATGCAGAAGTTTCCTCCGTTCAATGGAACCGATTCGCCCTCGTGGATCTTGAAAATGGAATGGTACTTT
GAGTTTCACCACATAGACGACTTTGCCGAGATGATGGACATTATCGCACTCTGTATGACTGGCCGAGCCCTAAACTGGTTCCGATGCGTTCTAAATAGGAAAAACCCGCC
GGGATCGTGGGATGAGTTTCGACACGCTTTGTTTAAGCGATTTGAAAACGGCGACACCATGTATGGCAGGTTCATTGCCTTACAGCAAGAGGGGAGCGTGAGGAACTATT
GCAGCCAGTTCGAGTTACTAGGGGCGCTCCTTCCAGACATTCCTGACTGCATTCTTGAAGCAAAGTTTATGAACGGCTTAAAGGCGGAGGTTCGAGCGGAGGTTCGGATG
TTACAACCAAAAGGTATAGAGGAAATCATGAGAAAGGCGAGGTTGGTGGACGACATGAACAACGTTGCGCTGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAGGGAGCAAAATGAAAAACCGAATCGAAGCATTGGAAATGGAGTTGAAGAAGCTTTCAGATGAAGTTCAGAAGATCCCAACAATGGAGAAAAACATCACGGC
TCTGTTAGAAGAAATGGCCCAGCTTCGGCTGCGCCAGGAAGCCACTGAGACATTGATCCAGAAAATGCAAGAGAAGAAGGAACCGCAGTCCAGTAAAGCGAAACGAAGAG
TAAAAGAATACCAACGCCTACCTGAATCCCTAGCCCGCCGAATGCAGAAGTTTCCTCCGTTCAATGGAACCGATTCGCCCTCGTGGATCTTGAAAATGGAATGGTACTTT
GAGTTTCACCACATAGACGACTTTGCCGAGATGATGGACATTATCGCACTCTGTATGACTGGCCGAGCCCTAAACTGGTTCCGATGCGTTCTAAATAGGAAAAACCCGCC
GGGATCGTGGGATGAGTTTCGACACGCTTTGTTTAAGCGATTTGAAAACGGCGACACCATGTATGGCAGGTTCATTGCCTTACAGCAAGAGGGGAGCGTGAGGAACTATT
GCAGCCAGTTCGAGTTACTAGGGGCGCTCCTTCCAGACATTCCTGACTGCATTCTTGAAGCAAAGTTTATGAACGGCTTAAAGGCGGAGGTTCGAGCGGAGGTTCGGATG
TTACAACCAAAAGGTATAGAGGAAATCATGAGAAAGGCGAGGTTGGTGGACGACATGAACAACGTTGCGCTGAACTAG
Protein sequenceShow/hide protein sequence
MGRGSKMKNRIEALEMELKKLSDEVQKIPTMEKNITALLEEMAQLRLRQEATETLIQKMQEKKEPQSSKAKRRVKEYQRLPESLARRMQKFPPFNGTDSPSWILKMEWYF
EFHHIDDFAEMMDIIALCMTGRALNWFRCVLNRKNPPGSWDEFRHALFKRFENGDTMYGRFIALQQEGSVRNYCSQFELLGALLPDIPDCILEAKFMNGLKAEVRAEVRM
LQPKGIEEIMRKARLVDDMNNVALN