; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036824 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036824
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationscaffold5:47663759..47672280
RNA-Seq ExpressionSpg036824
SyntenySpg036824
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056659.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-4041.06Show/hide
Query:  EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG
        E T+  GE+   ++  DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA++SF +  VDWYRWSHNR+++ S  DLK R+F+ FR + + 
Subjt:  EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG

Query:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTA
        SL AR + I+Q+ S ++Y+K+F  Y APLP + E+VL + FL G +P ++A V+SR P  LEE M  AQL+       N  LK    +  A  G+     
Subjt:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTA

Query:  KKTSGGKV----SKSIKSFNEW-IEDCSF--------FDPPFSNGRFTWANSRACSRIDKALC
         +T+G KV     K I   NE+ ++  +          +PP    R + A  RA  R+DK LC
Subjt:  KKTSGGKV----SKSIKSFNEW-IEDCSF--------FDPPFSNGRFTWANSRACSRIDKALC

KAA0067146.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.8e-4048.13Show/hide
Query:  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMA
        DRSK+K+LEMP+F G+NP+SW++RTE +FEI+ L + EK+ VA+++F +  VDWY WSHNRK++ S  DLKGR+F+ FR S + SL AR + I+Q  S  
Subjt:  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMA

Query:  EYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKT
        +Y+K+F  Y APLP + E+VL + F+ G +P ++A V+SR P  LEE M EAQL+  +     + + E    +   EG G ST KKT
Subjt:  EYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKT

TYK22652.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-4045.6Show/hide
Query:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC
        E ++ P   GG  D+S +K+LEMPVF+G+NP+SW++R E YF+I++L + EK+ VA++SF    V+W+RWS+NRK+I+S  DLK R+F+HF+   EGSL 
Subjt:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC

Query:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW
        AR + I+Q    A+Y+K+F  Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L +W
Subjt:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]5.4e-4142.15Show/hide
Query:  GDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSM
        GDRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA++SF +  VDWYRWSHNR+++ S  DLK R+F  F+ + + SL AR + I+Q  S 
Subjt:  GDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSM

Query:  AEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQL----AIEGMGPSTAKKTSGGKVSKS
         +Y+K+F  Y APLP + E+VL + FL G +P ++A VVSR P+ LEE M EAQL+        W   E               GP   +K    K    
Subjt:  AEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQL----AIEGMGPSTAKKTSGGKVSKS

Query:  IKSFNEWIE-DCSFFDPPFSNGRFTWANSRACSRIDKALCSK
        +K     I+ +    +PP    R + A  RA  R+DK LC K
Subjt:  IKSFNEWIE-DCSFFDPPFSNGRFTWANSRACSRIDKALCSK

XP_038893564.1 uncharacterized protein LOC120082453 [Benincasa hispida]1.3e-4251.76Show/hide
Query:  TEKEGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG
        T  E E  P   GG  D+SK+KRLE+P+F+G+NP+SW++R E YFEI++L++ EK+ V +I+F    VDW+RWSHNR+ IN   +LK R+F+++RP+ EG
Subjt:  TEKEGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG

Query:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQL
        SL AR L IKQ+ S A+Y+K+F  Y APLP+L E VL++ F+NG +P ++  V+SR+ I LEE + EAQL
Subjt:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQL

TrEMBL top hitse value%identityAlignment
A0A5A7T3B8 Retrotransposon protein5.0e-4044.51Show/hide
Query:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC
        E ++ P   GG  D+S +K+LEMPVF+G+NP+SW+++ + YF+I++L + EK+ V ++SF    V+W+RWS+NRK+I+S  DLK R+F+HF+ S EGSL 
Subjt:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC

Query:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW
        AR + I+Q    A+Y+K+F  Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L +W
Subjt:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW

A0A5A7UT21 Ty3/gypsy retrotransposon protein2.2e-4041.06Show/hide
Query:  EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG
        E T+  GE+   ++  DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L E EK+ VA++SF +  VDWYRWSHNR+++ S  DLK R+F+ FR + + 
Subjt:  EATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG

Query:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTA
        SL AR + I+Q+ S ++Y+K+F  Y APLP + E+VL + FL G +P ++A V+SR P  LEE M  AQL+       N  LK    +  A  G+     
Subjt:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTA

Query:  KKTSGGKV----SKSIKSFNEW-IEDCSF--------FDPPFSNGRFTWANSRACSRIDKALC
         +T+G KV     K I   NE+ ++  +          +PP    R + A  RA  R+DK LC
Subjt:  KKTSGGKV----SKSIKSFNEW-IEDCSF--------FDPPFSNGRFTWANSRACSRIDKALC

A0A5A7UYM1 Ty3/gypsy retrotransposon protein6.5e-4049.43Show/hide
Query:  KEGEVEP-PKVGG---DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG
        K  E EP  ++ G   DRSK+K+LEMP+F G+NP+SW++R E +FEI+ L+E EK+ VA++SF +  VDWYRWSHNRK++ S  DLK R+F+ FR S + 
Subjt:  KEGEVEP-PKVGG---DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEG

Query:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETW
        SL AR + I+Q+ S  EY+K+F  Y APLP + E+VL + F+ G +P ++A V+SR P  LE+ M EAQL+    +
Subjt:  SLCARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETW

A0A5D3BC89 Ty3-gypsy retrotransposon protein3.8e-4048.13Show/hide
Query:  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMA
        DRSK+K+LEMP+F G+NP+SW++RTE +FEI+ L + EK+ VA+++F +  VDWY WSHNRK++ S  DLKGR+F+ FR S + SL AR + I+Q  S  
Subjt:  DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLTIKQQYSMA

Query:  EYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKT
        +Y+K+F  Y APLP + E+VL + F+ G +P ++A V+SR P  LEE M EAQL+  +     + + E    +   EG G ST KKT
Subjt:  EYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKT

A0A5D3DGC7 Retrotransposon protein2.2e-4045.6Show/hide
Query:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC
        E ++ P   GG  D+S +K+LEMPVF+G+NP+SW++R E YF+I++L + EK+ VA++SF    V+W+RWS+NRK+I+S  DLK R+F+HF+   EGSL 
Subjt:  EGEVEPPKVGG--DRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLC

Query:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW
        AR + I+Q    A+Y+K+F  Y APLPE+ E+VL + F+ G +  ++A V+SR P+ LE+ M EAQ++    +     L +W
Subjt:  ARFLTIKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAGCAACAGAGAAAGAAGGAGAAGTCGAGCCACCAAAGGTAGGAGGAGACCGTAGCAAGTTCAAGAGGTTAGAAATGCCGGTATTCTCAGGGGATAACCCCGA
TTCGTGGCTATTCCGTACGGAGAGGTATTTCGAAATCCATCAACTTACAGAGTGGGAAAAAATCACAGTTGCTATCATTAGCTTCGATGAGTACGTGGTAGACTGGTATA
GATGGTCTCACAATCGGAAACAGATTAATTCTTCGGCCGACTTGAAAGGTCGGTTGTTCAAACATTTCAGACCTTCCCAAGAAGGGAGCTTGTGCGCACGTTTCTTGACC
ATTAAACAACAATACTCAATGGCAGAGTATATCAAGAGGTTCAAGGTTTATGTGGCACCCCTGCCGGAGCTGCCAGAGACAGTATTAGAAAACACATTCCTCAACGGCCC
GAAACCCGTCGTGAAGGCTACTGTGGTCAGTCGACGTCCTATTGGACTGGAAGAGATCATGACTGAGGCCCAACTCATGAAGACAGAGACTTGGCCATCCAACTGGCTAT
TGAAGGAATGGGCCCCCATCCAACTGGCTATTGAAGGAATGGGCCCAAGCACGGCAAAAAAGACTTCGGGAGGGAAGGTTTCGAAATCGATAAAGTCGTTTAATGAGTGG
ATTGAGGATTGCAGCTTTTTTGACCCCCCTTTTTCTAATGGGAGATTCACTTGGGCTAATAGTAGGGCGTGCAGTAGAATCGATAAAGCTCTTTGCTCTAAGGGTTGGAT
GGATACCTTCCATTGTGTCAGACAGTCCTTAGGCCCTCGAGTTACTTCTAATCACTGGCCCTTAATCCTTCTGTCGGGCCCTCAGAAATGGTGCCCTTGTCCTTTTCGCT
TTGAGAATATGTGGTTGGATCATCCGTCCTTCAAATCTTCCTTCCCATCGTGGTGGAATATTGAGGCTCCTGAGAAGTGGGAAGGGTATAGGTTTATGGGTAAATTAAGA
GCCCTAAGGAGAACTCTTAAATTGTGGAATAAAGAGGCCTTCGGTGATATTAAGCAAGAGTGGGGAGTCGAACTTGAGACAGGTATGGCAGTATGGGATCATGATTGTTT
GGTGGTAGTAGCAAAAGCACAAAACTTAAGTATGTTGGAGAAAAAGATTGGAATCGACCGACATCATCTTTCAGGAAAGGAATCGTCTCTGTTGGCAACGGAACTACTTG
TTTGTTATTCCTCCGGAGATGGGTGGATAGGATACTACTTTATGAAAAAGTTGGAAGAAATTAAAGGTATTCTCACAGCTTGGAATATCAAGTCTTTTGGGAATATCAAA
CAAATTAAACTATCCATTCAAGAGCAGATTTCTGCTTTAGATAGTTTGGAAGTTGGAAAGACTCTACGTGACCAAGAGATCAAGGAAAGAAAATCCCTTAAATCTTCTCT
CATGGAGATTAAAGGAAAAGAGATTGTGGTTCCAGAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAGCAACAGAGAAAGAAGGAGAAGTCGAGCCACCAAAGGTAGGAGGAGACCGTAGCAAGTTCAAGAGGTTAGAAATGCCGGTATTCTCAGGGGATAACCCCGA
TTCGTGGCTATTCCGTACGGAGAGGTATTTCGAAATCCATCAACTTACAGAGTGGGAAAAAATCACAGTTGCTATCATTAGCTTCGATGAGTACGTGGTAGACTGGTATA
GATGGTCTCACAATCGGAAACAGATTAATTCTTCGGCCGACTTGAAAGGTCGGTTGTTCAAACATTTCAGACCTTCCCAAGAAGGGAGCTTGTGCGCACGTTTCTTGACC
ATTAAACAACAATACTCAATGGCAGAGTATATCAAGAGGTTCAAGGTTTATGTGGCACCCCTGCCGGAGCTGCCAGAGACAGTATTAGAAAACACATTCCTCAACGGCCC
GAAACCCGTCGTGAAGGCTACTGTGGTCAGTCGACGTCCTATTGGACTGGAAGAGATCATGACTGAGGCCCAACTCATGAAGACAGAGACTTGGCCATCCAACTGGCTAT
TGAAGGAATGGGCCCCCATCCAACTGGCTATTGAAGGAATGGGCCCAAGCACGGCAAAAAAGACTTCGGGAGGGAAGGTTTCGAAATCGATAAAGTCGTTTAATGAGTGG
ATTGAGGATTGCAGCTTTTTTGACCCCCCTTTTTCTAATGGGAGATTCACTTGGGCTAATAGTAGGGCGTGCAGTAGAATCGATAAAGCTCTTTGCTCTAAGGGTTGGAT
GGATACCTTCCATTGTGTCAGACAGTCCTTAGGCCCTCGAGTTACTTCTAATCACTGGCCCTTAATCCTTCTGTCGGGCCCTCAGAAATGGTGCCCTTGTCCTTTTCGCT
TTGAGAATATGTGGTTGGATCATCCGTCCTTCAAATCTTCCTTCCCATCGTGGTGGAATATTGAGGCTCCTGAGAAGTGGGAAGGGTATAGGTTTATGGGTAAATTAAGA
GCCCTAAGGAGAACTCTTAAATTGTGGAATAAAGAGGCCTTCGGTGATATTAAGCAAGAGTGGGGAGTCGAACTTGAGACAGGTATGGCAGTATGGGATCATGATTGTTT
GGTGGTAGTAGCAAAAGCACAAAACTTAAGTATGTTGGAGAAAAAGATTGGAATCGACCGACATCATCTTTCAGGAAAGGAATCGTCTCTGTTGGCAACGGAACTACTTG
TTTGTTATTCCTCCGGAGATGGGTGGATAGGATACTACTTTATGAAAAAGTTGGAAGAAATTAAAGGTATTCTCACAGCTTGGAATATCAAGTCTTTTGGGAATATCAAA
CAAATTAAACTATCCATTCAAGAGCAGATTTCTGCTTTAGATAGTTTGGAAGTTGGAAAGACTCTACGTGACCAAGAGATCAAGGAAAGAAAATCCCTTAAATCTTCTCT
CATGGAGATTAAAGGAAAAGAGATTGTGGTTCCAGAAAAGTAA
Protein sequenceShow/hide protein sequence
MNEATEKEGEVEPPKVGGDRSKFKRLEMPVFSGDNPDSWLFRTERYFEIHQLTEWEKITVAIISFDEYVVDWYRWSHNRKQINSSADLKGRLFKHFRPSQEGSLCARFLT
IKQQYSMAEYIKRFKVYVAPLPELPETVLENTFLNGPKPVVKATVVSRRPIGLEEIMTEAQLMKTETWPSNWLLKEWAPIQLAIEGMGPSTAKKTSGGKVSKSIKSFNEW
IEDCSFFDPPFSNGRFTWANSRACSRIDKALCSKGWMDTFHCVRQSLGPRVTSNHWPLILLSGPQKWCPCPFRFENMWLDHPSFKSSFPSWWNIEAPEKWEGYRFMGKLR
ALRRTLKLWNKEAFGDIKQEWGVELETGMAVWDHDCLVVVAKAQNLSMLEKKIGIDRHHLSGKESSLLATELLVCYSSGDGWIGYYFMKKLEEIKGILTAWNIKSFGNIK
QIKLSIQEQISALDSLEVGKTLRDQEIKERKSLKSSLMEIKGKEIVVPEK