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Spg036865 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036865
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:47614879..47622514
RNA-Seq ExpressionSpg036865
SyntenySpg036865
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060138.1 uncharacterized protein E6C27_scaffold39G00590 [Cucumis melo var. makuwa]8.9e-2360.38Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVT--RPSSYERGDSSSGSAALMDERV
        MSST    K    RLVE++EQ+LYL EVPD+IR++ESRLDEIS K + +D VAGCV+G+PIQEL+ RV+ LE+ ++  R  +YERGDS SG AA M+ERV
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVT--RPSSYERGDSSSGSAALMDERV

Query:  DCLDNS
        + LDNS
Subjt:  DCLDNS

KAA0066437.1 uncharacterized protein E6C27_scaffold21G005300 [Cucumis melo var. makuwa]1.4e-2362.5Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MSST   +K    RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K N +DAVAGCV+G+PIQEL+ RV+ LE  V R  +YE GDSSSG  A M+ERV+ 
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        LD+S
Subjt:  LDNS

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.0e-2359.62Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL+K+HV RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV   +DG+PIQ++ +RVE LESK TRP S+ERGDSS+     ++ R+  
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        L+NS
Subjt:  LDNS

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]1.4e-2359.62Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL+K+HV RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV   VDG+PIQ++ +RVE  ESK TRP S+ERGDSS+     ++ R+  
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        L+NS
Subjt:  LDNS

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.8e-2461.54Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL K+H+ RLVEIEE+LL+LRE+PD +R+VESRLDEISTKA+ +D V   +DG+ I+EL++RVE LE KV R  + ERG+SSS S A M+ERV+ 
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        +D S
Subjt:  LDNS

TrEMBL top hitse value%identityAlignment
A0A5A7UY20 Retrotrans_gag domain-containing protein4.3e-2360.38Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVT--RPSSYERGDSSSGSAALMDERV
        MSST    K    RLVE++EQ+LYL EVPD+IR++ESRLDEIS K + +D VAGCV+G+PIQEL+ RV+ LE+ ++  R  +YERGDS SG AA M+ERV
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVT--RPSSYERGDSSSGSAALMDERV

Query:  DCLDNS
        + LDNS
Subjt:  DCLDNS

A0A5A7VH68 Uncharacterized protein6.6e-2462.5Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MSST   +K    RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K N +DAVAGCV+G+PIQEL+ RV+ LE  V R  +YE GDSSSG  A M+ERV+ 
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        LD+S
Subjt:  LDNS

A0A6J1D906 Reverse transcriptase5.1e-2459.62Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL+K+HV RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV   +DG+PIQ++ +RVE LESK TRP S+ERGDSS+     ++ R+  
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        L+NS
Subjt:  LDNS

A0A6J1DK29 uncharacterized protein LOC1110218296.6e-2459.62Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL+K+HV RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV   VDG+PIQ++ +RVE  ESK TRP S+ERGDSS+     ++ R+  
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        L+NS
Subjt:  LDNS

A0A6J1DLQ6 uncharacterized protein LOC1110223201.3e-2461.54Show/hide
Query:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC
        MS+TKQL K+H+ RLVEIEE+LL+LRE+PD +R+VESRLDEISTKA+ +D V   +DG+ I+EL++RVE LE KV R  + ERG+SSS S A M+ERV+ 
Subjt:  MSSTKQLAKTHVKRLVEIEEQLLYLREVPDAIRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDC

Query:  LDNS
        +D S
Subjt:  LDNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGTTGTTTATTGACCGTAAATCGTTCAAGCTTTCAAAGAGTGAGTGTGGGAGGAAAGTAATGGTGGAGCGCAGAGTAGCAGAGTGGGGAAAGTGGAACTTGGG
ACAGGTACGGCAGTTGGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGTCGCAACGCCAGATGGAAAAGTGGATGGAC
AATCCGAGAAGAGCAACGGGGGTGGAGGTTACGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGATTTACTCGTGGGCGAGATTGAAAACATGTCG
TCGACCAAGCAGTTGGCGAAGACCCACGTGGAACGTTTGGTAGAGATCGAAGAGCAGTTACTCTACCTAAGGGAAGTCCCGGATGCTATTCGGTTCGTGGAATCTCAGCT
GGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGGATGCCCATCCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAGTAAAGTTA
CACGACCTGTTGAAAGCATGTCGTCGACCAAGCAGTTGGCAAAGACCCACGTGAAACGTTTGGTAGAGATCGAAGAGCAATTGCTCTACTTGAGAGAAGTCCCTGACGCT
ATTCGGTTTGTGGAATCTCGACTGGATGAGATTTCGACTAAAGCCAACAAAGTTGATGCGGTAGCTGGCTGCGTGGATGGAATGCCCATCCAAGAATTGATTATAAGGGT
TGAGAAACTTGAAAGTAAAGTTACTCGACCTAGTAGCTACGAGCGTGGTGATAGCTCGTCGGGCTCTGCAGCCCTGATGGATGAGCGCGTCGATTGTTTGGACAACTCCT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGTTGTTTATTGACCGTAAATCGTTCAAGCTTTCAAAGAGTGAGTGTGGGAGGAAAGTAATGGTGGAGCGCAGAGTAGCAGAGTGGGGAAAGTGGAACTTGGG
ACAGGTACGGCAGTTGGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGTCGCAACGCCAGATGGAAAAGTGGATGGAC
AATCCGAGAAGAGCAACGGGGGTGGAGGTTACGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGATTTACTCGTGGGCGAGATTGAAAACATGTCG
TCGACCAAGCAGTTGGCGAAGACCCACGTGGAACGTTTGGTAGAGATCGAAGAGCAGTTACTCTACCTAAGGGAAGTCCCGGATGCTATTCGGTTCGTGGAATCTCAGCT
GGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGGATGCCCATCCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAGTAAAGTTA
CACGACCTGTTGAAAGCATGTCGTCGACCAAGCAGTTGGCAAAGACCCACGTGAAACGTTTGGTAGAGATCGAAGAGCAATTGCTCTACTTGAGAGAAGTCCCTGACGCT
ATTCGGTTTGTGGAATCTCGACTGGATGAGATTTCGACTAAAGCCAACAAAGTTGATGCGGTAGCTGGCTGCGTGGATGGAATGCCCATCCAAGAATTGATTATAAGGGT
TGAGAAACTTGAAAGTAAAGTTACTCGACCTAGTAGCTACGAGCGTGGTGATAGCTCGTCGGGCTCTGCAGCCCTGATGGATGAGCGCGTCGATTGTTTGGACAACTCCT
AA
Protein sequenceShow/hide protein sequence
MGRLFIDRKSFKLSKSECGRKVMVERRVAEWGKWNLGQVRQLESRSILSKWYQSVHLGEDTSHVATPDGKVDGQSEKSNGGGGYEIGPLCHRRSGIELADLLVGEIENMS
STKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESQLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKVTRPVESMSSTKQLAKTHVKRLVEIEEQLLYLREVPDA
IRFVESRLDEISTKANKVDAVAGCVDGMPIQELIIRVEKLESKVTRPSSYERGDSSSGSAALMDERVDCLDNS