; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036885 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036885
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA ligase 1
Genome locationscaffold5:41719358..41721869
RNA-Seq ExpressionSpg036885
SyntenySpg036885
Gene Ontology termsGO:0007131 - reciprocal meiotic recombination (biological process)
GO:0099086 - synaptonemal structure (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146600.1 DNA ligase 1 isoform X1 [Cucumis sativus]1.3e-9590.41Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLS+   DLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFL+TGSDEDFPADD
Subjt:  KTLGSFLETGSDEDFPADD

XP_022140180.1 DNA ligase 1 [Momordica charantia]3.4e-9690.87Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLS+   DLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIAQLEESLKRKKQD KTFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDFPA+D
Subjt:  KTLGSFLETGSDEDFPADD

XP_022927498.1 DNA ligase 1 [Cucurbita moschata]1.5e-9691.32Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDF ADD
Subjt:  KTLGSFLETGSDEDFPADD

XP_023001751.1 DNA ligase 1 [Cucurbita maxima]9.1e-9791.32Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDFP DD
Subjt:  KTLGSFLETGSDEDFPADD

XP_023520366.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]1.7e-9590.41Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGNMK+P AKTRTRKR S++DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDF ADD
Subjt:  KTLGSFLETGSDEDFPADD

TrEMBL top hitse value%identityAlignment
A0A0A0LRW7 Uncharacterized protein6.3e-9690.41Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLS+   DLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFL+TGSDEDFPADD
Subjt:  KTLGSFLETGSDEDFPADD

A0A5D3DS94 DNA ligase 1 isoform X11.2e-9489.95Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        M N+K+PTAKTR+RKR SDTDLTSS+QR RTNDDIDLDLDLS+   DLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFL+TGSDEDFPADD
Subjt:  KTLGSFLETGSDEDFPADD

A0A6J1CEE2 DNA ligase 11.7e-9690.87Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLS+   DLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIAQLEESLKRKKQD KTFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDFPA+D
Subjt:  KTLGSFLETGSDEDFPADD

A0A6J1EL64 DNA ligase 17.5e-9791.32Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDF ADD
Subjt:  KTLGSFLETGSDEDFPADD

A0A6J1KJH3 DNA ligase 14.4e-9791.32Show/hide
Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA
        MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFA
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFA

Query:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR
        KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LR
Subjt:  KALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLR

Query:  KTLGSFLETGSDEDFPADD
        KTLGSFLETGSDEDFP DD
Subjt:  KTLGSFLETGSDEDFPADD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G33793.1 unknown protein7.2e-6066.49Show/hide
Query:  DLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATH
        +LD+D+S    D KGIMSAL Q RE+A +D +KK EE+ISSV+TE+++ I+E+KSK EK+RQ+F+KALSKSSKECEN LKDE AKF+ L++KF K+KA H
Subjt:  DLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATH

Query:  LQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLET-GSDEDFPADD
        LQ +KDTISKFEE+KERL+ +YEQLRK+E+ +I+EQEK C EK+AQLEESLK+KK+  KTFS LRKTLGSFLE   SDE+FP D+
Subjt:  LQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLET-GSDEDFPADD

AT2G46980.2 unknown protein9.6e-0425.93Show/hide
Query:  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERL
        AL     + +   +KK+ E I+SV+ EI   +E +KS    +    +       K  E  L+++  K + ++EKF  + + HL+  K TI + E  +  L
Subjt:  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERL

Query:  FAKYEQLRKRERNLISEQEKACAEKIAQLEESLKR
            ++ R   + LI+  E     K   L+++ KR
Subjt:  FAKYEQLRKRERNLISEQEKACAEKIAQLEESLKR

AT2G46980.3 unknown protein9.6e-0425.93Show/hide
Query:  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERL
        AL     + +   +KK+ E I+SV+ EI   +E +KS    +    +       K  E  L+++  K + ++EKF  + + HL+  K TI + E  +  L
Subjt:  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERL

Query:  FAKYEQLRKRERNLISEQEKACAEKIAQLEESLKR
            ++ R   + LI+  E     K   L+++ KR
Subjt:  FAKYEQLRKRERNLISEQEKACAEKIAQLEESLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACATGAAATTGCCAACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCT
CGATCTCGACCTTTCCGAGTACGTACTCGATCTCAAAGGGATAATGTCGGCGCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCA
TCTCAAGCGTAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGT
GAAAATTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAAGCCATAAAAGATACCATTTCCAAATTTGA
AGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGG
AGTCTTTGAAAAGGAAAAAGCAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACACTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACATGAAATTGCCAACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCT
CGATCTCGACCTTTCCGAGTACGTACTCGATCTCAAAGGGATAATGTCGGCGCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCA
TCTCAAGCGTAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGT
GAAAATTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAAGCCATAAAAGATACCATTTCCAAATTTGA
AGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGG
AGTCTTTGAAAAGGAAAAAGCAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACACTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA
Protein sequenceShow/hide protein sequence
MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKEC
ENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD