; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036913 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036913
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:48131426..48132950
RNA-Seq ExpressionSpg036913
SyntenySpg036913
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150028.1 uncharacterized protein LOC111018300 [Momordica charantia]2.0e-4146.15Show/hide
Query:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-------------------------GPAGGSS
        VP EQVLMEI+   LL++P RM +   +R K +YCLFHRDH H+T++C  LK E++ LIQ GYLKE++                         GP     
Subjt:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-------------------------GPAGGSS

Query:  SRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGF
         RKRKA +RE         +Y   ++K P  +EF+E EA  +  PHND LV+TL +AN K+HRIL+DGGSSAD++SLTA+KAM L     K S   LV F
Subjt:  SRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGF

Query:  GGERVTPE
         GERV PE
Subjt:  GGERVTPE

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]2.9e-4049.46Show/hide
Query:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-GPAGGSSSRKRKAIVREAMFEPEYRGMYSVH
        VP EQV +EI++  LLK+P RMK+ P +R K +YC FH DH H+T++C  LK+E+E LIQ GYLKE++  P    + R+R+A          Y+ +Y   
Subjt:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-GPAGGSSSRKRKAIVREAMFEPEYRGMYSVH

Query:  LSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
        + + P  +EF E E   I  PHNDALV+ L +AN K+H IL+DGGSS D++SLTA+K M L    LK S  PLVGFGGE V PE
Subjt:  LSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]8.6e-4552.36Show/hide
Query:  KYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI--GPAGGSSSRKRKAIVREAMFEPEY
        K TPT V  EQVLMEI++  LLK+P RMK+ P +R K QY LFHRDHGH+T++C  LK+E+E LI++GYLKE++    A  +      + VRE       
Subjt:  KYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI--GPAGGSSSRKRKAIVREAMFEPEY

Query:  RGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
               + + P  LEF+E EA  +  PHNDALV+TL +AN K+HRIL+DGGSS  ++SLTA+KAM L  + LK S  PLVGFGGERV PE
Subjt:  RGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]3.7e-4854.26Show/hide
Query:  YTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFIGPAGGSSSRKRKAIVREAMFEPEYRGM
        YT T +P EQVLMEI++  LLK+P RMK+   +R K +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE           K+KA VREA    E   +
Subjt:  YTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFIGPAGGSSSRKRKAIVREAMFEPEYRGM

Query:  YSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
        Y  +++  P  +EF+E EA  +   HNDALV+TL +ANVK+HRIL+DGGSSAD++S TA+KAM LE ++LK S  PLVGFGGERV  E
Subjt:  YSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.1e-5346.69Show/hide
Query:  MSAEELLKSKKSEREHKRSSSSDHDSRKDKKQRTDEGGRGRPDHGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYC
        MSA E   SK+ E + KR+          K++R+ +  +G     R R  +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++  +R K +YC
Subjt:  MSAEELLKSKKSEREHKRSSSSDHDSRKDKKQRTDEGGRGRPDHGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYC

Query:  LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI------------------------GPAGGSSSRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTE
        LFHRDHGH+T++C  LK+E+E LI+ GYLKE++                        GP    S RKRKA VREA    E   +Y  + +  P  +EF+E
Subjt:  LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI------------------------GPAGGSSSRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTE

Query:  AEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
         EA  +  PHNDALV+ L +ANVK+HR+L+DGGSSAD++S TA+KAM L  ++LK S  PLVGFG ERV PE
Subjt:  AEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

TrEMBL top hitse value%identityAlignment
A0A6J1D8C9 uncharacterized protein LOC1110183009.6e-4246.15Show/hide
Query:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-------------------------GPAGGSS
        VP EQVLMEI+   LL++P RM +   +R K +YCLFHRDH H+T++C  LK E++ LIQ GYLKE++                         GP     
Subjt:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-------------------------GPAGGSS

Query:  SRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGF
         RKRKA +RE         +Y   ++K P  +EF+E EA  +  PHND LV+TL +AN K+HRIL+DGGSSAD++SLTA+KAM L     K S   LV F
Subjt:  SRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGF

Query:  GGERVTPE
         GERV PE
Subjt:  GGERVTPE

A0A6J1DAK4 uncharacterized protein LOC1110189021.4e-4049.46Show/hide
Query:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-GPAGGSSSRKRKAIVREAMFEPEYRGMYSVH
        VP EQV +EI++  LLK+P RMK+ P +R K +YC FH DH H+T++C  LK+E+E LIQ GYLKE++  P    + R+R+A          Y+ +Y   
Subjt:  VPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI-GPAGGSSSRKRKAIVREAMFEPEYRGMYSVH

Query:  LSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
        + + P  +EF E E   I  PHNDALV+ L +AN K+H IL+DGGSS D++SLTA+K M L    LK S  PLVGFGGE V PE
Subjt:  LSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

A0A6J1DP33 uncharacterized protein LOC1110228864.2e-4552.36Show/hide
Query:  KYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI--GPAGGSSSRKRKAIVREAMFEPEY
        K TPT V  EQVLMEI++  LLK+P RMK+ P +R K QY LFHRDHGH+T++C  LK+E+E LI++GYLKE++    A  +      + VRE       
Subjt:  KYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI--GPAGGSSSRKRKAIVREAMFEPEY

Query:  RGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
               + + P  LEF+E EA  +  PHNDALV+TL +AN K+HRIL+DGGSS  ++SLTA+KAM L  + LK S  PLVGFGGERV PE
Subjt:  RGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

A0A6J1DRG9 uncharacterized protein LOC1110235871.8e-4854.26Show/hide
Query:  YTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFIGPAGGSSSRKRKAIVREAMFEPEYRGM
        YT T +P EQVLMEI++  LLK+P RMK+   +R K +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE           K+KA VREA    E   +
Subjt:  YTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFIGPAGGSSSRKRKAIVREAMFEPEYRGM

Query:  YSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
        Y  +++  P  +EF+E EA  +   HNDALV+TL +ANVK+HRIL+DGGSSAD++S TA+KAM LE ++LK S  PLVGFGGERV  E
Subjt:  YSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

A0A6J1DWY0 uncharacterized protein LOC1110252931.9e-5347.06Show/hide
Query:  MSAEELLKSKKSEREHKRSSSSDHDSRKDKKQRTDEGGRGRPDHGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYC
        MSA E   SK+ E + KR+          K++R+ +  +G     R R  +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++  +R K +YC
Subjt:  MSAEELLKSKKSEREHKRSSSSDHDSRKDKKQRTDEGGRGRPDHGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYC

Query:  LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI------------------------GPAGGSSSRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTE
        LFHRDHGH+T++C  LK+E+E LI+ GYLKE++                        GP    S RKRKA VREA    E   +Y  + +  P  +EF+E
Subjt:  LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFI------------------------GPAGGSSSRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTE

Query:  AEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE
         EA  +  PHNDALV+ L +ANVK+HR+L+DGGSSAD+LS TA+KAM L  ++LK S  PLVGFG ERV PE
Subjt:  AEAASIHQPHNDALVVTLIVANVKIHRILIDGGSSADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCAGAAGAGTTGCTCAAGTCAAAGAAATCAGAACGTGAACACAAGAGGTCTTCGTCATCTGACCACGACAGTAGGAAGGATAAAAAGCAGCGGACCGAC
GAGGGAGGCCGAGGCCGACCAGACCATGGCCGAGGCCGACCAGACCGAGCACATCCCTTTGGTAAGTTCGAGAAATATACGCCAACAGCTGTTCCACAGGAGCAA
GTACTGATGGAGATCCGAAATACGGGACTCTTGAAATTCCCGGGGAGGATGAAGTCGAATCCTGATAGAAGAGACAAGAGCCAGTATTGTCTTTTCCACCGGGAC
CATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATCTGAAGGAATTCATCGGACCAGCTGGAGGAAGTTCA
AGCAGGAAGAGGAAAGCTATTGTCAGGGAAGCAATGTTCGAACCGGAGTATCGAGGTATGTACTCTGTCCATCTATCAAAGGCGCCCCCCCCTTTGGAGTTCACC
GAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTGGTGGTCACTCTAATTGTAGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGC
TCGGCTGATGTCCTTTCTTTAACAGCCTTTAAAGCCATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTG
ACCCCAGAAGTATTCAGGAGTGTGCACAAGACAACCGATTCAAGCATCACGAAACGCGAGCCTGGACCACCGAGTCTACCTCGCCCCATCGGCTTGAGACAATGT
GAGCCTGGACCCTGGGTCTACCTCACGAGCCATCACTTTTTGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCAGAAGAGTTGCTCAAGTCAAAGAAATCAGAACGTGAACACAAGAGGTCTTCGTCATCTGACCACGACAGTAGGAAGGATAAAAAGCAGCGGACCGAC
GAGGGAGGCCGAGGCCGACCAGACCATGGCCGAGGCCGACCAGACCGAGCACATCCCTTTGGTAAGTTCGAGAAATATACGCCAACAGCTGTTCCACAGGAGCAA
GTACTGATGGAGATCCGAAATACGGGACTCTTGAAATTCCCGGGGAGGATGAAGTCGAATCCTGATAGAAGAGACAAGAGCCAGTATTGTCTTTTCCACCGGGAC
CATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATCTGAAGGAATTCATCGGACCAGCTGGAGGAAGTTCA
AGCAGGAAGAGGAAAGCTATTGTCAGGGAAGCAATGTTCGAACCGGAGTATCGAGGTATGTACTCTGTCCATCTATCAAAGGCGCCCCCCCCTTTGGAGTTCACC
GAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTGGTGGTCACTCTAATTGTAGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGC
TCGGCTGATGTCCTTTCTTTAACAGCCTTTAAAGCCATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTG
ACCCCAGAAGTATTCAGGAGTGTGCACAAGACAACCGATTCAAGCATCACGAAACGCGAGCCTGGACCACCGAGTCTACCTCGCCCCATCGGCTTGAGACAATGT
GAGCCTGGACCCTGGGTCTACCTCACGAGCCATCACTTTTTGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCAGTTTGA
Protein sequenceShow/hide protein sequence
MSAEELLKSKKSEREHKRSSSSDHDSRKDKKQRTDEGGRGRPDHGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRD
HGHSTRNCIQLKDEIEALIQNGYLKEFIGPAGGSSSRKRKAIVREAMFEPEYRGMYSVHLSKAPPPLEFTEAEAASIHQPHNDALVVTLIVANVKIHRILIDGGS
SADVLSLTAFKAMQLERELLKPSLTPLVGFGGERVTPEVFRSVHKTTDSSITKREPGPPSLPRPIGLRQCEPGPWVYLTSHHFLRAWTTESTSPHPV