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Spg036941 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036941
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:47652262..47657478
RNA-Seq ExpressionSpg036941
SyntenySpg036941
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037917.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-2441.41Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

TYK03081.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2333.86Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F    P  W ++A  YF    LS  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNP
        SA LP + +E++E  F NGLDP   KE+  + +  ++ +M   ++       K +  K   +P    S L K   K NL P+ +++ +P
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNP

TYK05726.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2342.19Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  RQ  TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

TYK18994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-2441.41Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

XP_022897442.1 uncharacterized protein LOC111411108 [Olea europaea var. sylvestris]3.0e-2442.25Show/hide
Query:  MPIF-GGSPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P+ W+F+  +YF+  RLS EEK++AA + F   AL W QW E +  ++ W+DL   +  RF+P QEGS+CA+FL  +Q  TV E+R  FE L
Subjt:  MPIF-GGSPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEMGLCIDAIKKIMRPL
        ++PL  +++E++E  F NGL  E        I A  +++RPL
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEMGLCIDAIKKIMRPL

TrEMBL top hitse value%identityAlignment
A0A5A7T8L1 Ty3-gypsy retrotransposon protein2.5e-2441.41Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

A0A5D3BTN5 Ty3-gypsy retrotransposon protein5.5e-2433.86Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F    P  W ++A  YF    LS  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNP
        SA LP + +E++E  F NGLDP   KE+  + +  ++ +M   ++       K +  K   +P    S L K   K NL P+ +++ +P
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNP

A0A5D3C5T9 Ty3-gypsy retrotransposon protein5.5e-2442.19Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  RQ  TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

A0A5D3D605 Ty3-gypsy retrotransposon protein2.5e-2441.41Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEEL
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEM
        SAPLP + +E++E  F NGLDP   KE+
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEM

W9QTX5 Mediator of RNA polymerase II transcription subunit 252.1e-2341.54Show/hide
Query:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL
        MP+F G +P+ W  +A +YF   +++  EK+  A +S    AL W QW +G+  ++ W  L   + ERF+PMQEGS+C +FL  RQ+ TV ++R  FE L
Subjt:  MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEEL

Query:  SAPLPHLTDEIIESLFFNGLDPESIKEMGL
        +APL  L+++++ES F  GL PE   E+ L
Subjt:  SAPLPHLTDEIIESLFFNGLDPESIKEMGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATTTTTGGAGGTTCCCCGAACGATTGGTTGTTTCAGGCGGCACAATATTTCACTACTCAAAGGCTGTCCAATGAAGAAAAAGTGCAGGCAGCGACTATTTCCTT
CACTGAGGCAGCGTTGCAGTGGCTTCAATGGGCAGAAGGCAAGGAATCGTTACAGGGATGGAAGGATCTCATGAATCGGATATTCGAAAGATTCAAACCTATGCAAGAAG
GCTCCGTATGTGCGAGATTCCTAGTTGCGCGACAAGACAACACTGTACCAGAGTTCAGAGAATGTTTTGAAGAATTATCAGCACCCCTGCCACACCTAACAGACGAGATT
ATAGAGAGCTTGTTTTTTAATGGACTGGACCCAGAGTCGATTAAGGAGATGGGCCTCTGTATAGATGCGATAAAAAAAATTATGAGACCATTGAAGATTATAGGCCATTC
TGGAGTGTTCAAGATGAAATTGGGGAAATTTCGATCATTTCCCAACAATCAAATGTCAACACTAGGCAAAATCTACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAA
GCCAAAATCCCGAGGGCAACGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGACAGCGTCAAGTCGTTGCCCTTAGCATCTCGATGCTCTAGGACCGCTGGC
GCTGAAATTCCAACATCTCAACGTTGGCCCAGCGACTCAACGAGGTCTACTACGCGCTCACTTCCATATGCCTTTCGTCCGGAGCGTCTTCACGTTAGGAGAGTTCCTTT
GTTAATCTTAAAAGATCCCTGTCCTTTTGAAGTCATTTCTGGTCTTAAGATTAATGGAGGAAAAAGTTGTTGCCCGTCCAAGTTGGCGTCATGGGGACGTTGGAGGAATG
AAGAGGACTTGGAGCATTTATGGTTTGAAGGCGACCCAAGGCGCTCGCCAAAGGCGAGAGGCGAGGCAACCTTGGGTTGTTGCGCCTTGAAGGCAGCTAGGGCGAGTGCC
TTCAACCAGGCGCTCGCCTCACTGCACCTTTTGCAACGCCTTTTTGTCGCCTCTCGCCTTGAGGCGATTAGAAGACTTGTCGCCCTTGAGTGCGCCTTGCGCTTTGAAAA
CACTAGTTTGAAAGAACAAGTCATCCTAGGAAAGACACAAGGAATGGCGCAAAAGCAACTAGAGGAGCGTATAGTTGAGGCTGAAAAAAGTACGGGAGGTATGCGGGAGA
AATTACCAGAACTAGAAAAATCTGTCGCCAAACTTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCATTTTTGGAGGTTCCCCGAACGATTGGTTGTTTCAGGCGGCACAATATTTCACTACTCAAAGGCTGTCCAATGAAGAAAAAGTGCAGGCAGCGACTATTTCCTT
CACTGAGGCAGCGTTGCAGTGGCTTCAATGGGCAGAAGGCAAGGAATCGTTACAGGGATGGAAGGATCTCATGAATCGGATATTCGAAAGATTCAAACCTATGCAAGAAG
GCTCCGTATGTGCGAGATTCCTAGTTGCGCGACAAGACAACACTGTACCAGAGTTCAGAGAATGTTTTGAAGAATTATCAGCACCCCTGCCACACCTAACAGACGAGATT
ATAGAGAGCTTGTTTTTTAATGGACTGGACCCAGAGTCGATTAAGGAGATGGGCCTCTGTATAGATGCGATAAAAAAAATTATGAGACCATTGAAGATTATAGGCCATTC
TGGAGTGTTCAAGATGAAATTGGGGAAATTTCGATCATTTCCCAACAATCAAATGTCAACACTAGGCAAAATCTACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAA
GCCAAAATCCCGAGGGCAACGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGACAGCGTCAAGTCGTTGCCCTTAGCATCTCGATGCTCTAGGACCGCTGGC
GCTGAAATTCCAACATCTCAACGTTGGCCCAGCGACTCAACGAGGTCTACTACGCGCTCACTTCCATATGCCTTTCGTCCGGAGCGTCTTCACGTTAGGAGAGTTCCTTT
GTTAATCTTAAAAGATCCCTGTCCTTTTGAAGTCATTTCTGGTCTTAAGATTAATGGAGGAAAAAGTTGTTGCCCGTCCAAGTTGGCGTCATGGGGACGTTGGAGGAATG
AAGAGGACTTGGAGCATTTATGGTTTGAAGGCGACCCAAGGCGCTCGCCAAAGGCGAGAGGCGAGGCAACCTTGGGTTGTTGCGCCTTGAAGGCAGCTAGGGCGAGTGCC
TTCAACCAGGCGCTCGCCTCACTGCACCTTTTGCAACGCCTTTTTGTCGCCTCTCGCCTTGAGGCGATTAGAAGACTTGTCGCCCTTGAGTGCGCCTTGCGCTTTGAAAA
CACTAGTTTGAAAGAACAAGTCATCCTAGGAAAGACACAAGGAATGGCGCAAAAGCAACTAGAGGAGCGTATAGTTGAGGCTGAAAAAAGTACGGGAGGTATGCGGGAGA
AATTACCAGAACTAGAAAAATCTGTCGCCAAACTTAACTAG
Protein sequenceShow/hide protein sequence
MPIFGGSPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEI
IESLFFNGLDPESIKEMGLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNPEGNAMLNTARHCASKGDSVKSLPLASRCSRTAG
AEIPTSQRWPSDSTRSTTRSLPYAFRPERLHVRRVPLLILKDPCPFEVISGLKINGGKSCCPSKLASWGRWRNEEDLEHLWFEGDPRRSPKARGEATLGCCALKAARASA
FNQALASLHLLQRLFVASRLEAIRRLVALECALRFENTSLKEQVILGKTQGMAQKQLEERIVEAEKSTGGMREKLPELEKSVAKLN