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Spg036945 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036945
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:19635971..19636873
RNA-Seq ExpressionSpg036945
SyntenySpg036945
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.1e-2567.02Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
        V IELPVPD LPTSAESS S+SSTWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.8e-3167.89Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVTTWYQS
          VTTWYQS
Subjt:  GGVTTWYQS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2566.36Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V +   +F ++    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.1e-2568.48Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
        IELPVPDTLPTSAESS S+SSTWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2566.36Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V +   +F ++    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein2.0e-2567.02Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
        V IELPVPD LPTSAESS S+SSTWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

A0A5A7V638 Uncharacterized protein1.9e-3167.89Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVTTWYQS
          VTTWYQS
Subjt:  GGVTTWYQS

A0A5A7VMG9 Reverse transcriptase6.8e-2666.36Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V +   +F ++    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

A0A5D3CJX3 CCHC-type domain-containing protein5.2e-2668.48Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
        IELPVPDTLPTSAESS S+SSTWLELY ESV +             ++++F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVRI-------------VNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

A0A5D3DX39 Reverse transcriptase6.8e-2666.36Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V +   +F ++    GIVR DDVCWLHAVFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCGCATTGTAAATGTTTTGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCGCATTGTAAATGTTTTGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGC
TTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVRIVNVLFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS