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Spg036953 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036953
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:19631599..19634573
RNA-Seq ExpressionSpg036953
SyntenySpg036953
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-2151.54Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------
        LFGL Y EG KRPRGNR+SLQTGELDKT                 +EIE+PVPDTLPTSAESS S+SSTW                              
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------

Query:  ---ATGIVRGDDVCWLHAVFRAKLAGGPGG
           +T IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ---ATGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.2e-2346.75Show/hide
Query:  IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTIEIEVPVPDTLPTSAESSRSSSSTW---
        I K +AKPAIAES  N      LFGLSY E ++                       PRGNR +L TG+LDKT+EIE+PVPDTLPTSAESS+S+SSTW   
Subjt:  IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTIEIEVPVPDTLPTSAESSRSSSSTW---

Query:  ---------------------------ATGIVRGDDVCWLHAVFRAKLAGGPGG
                                   + GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ---------------------------ATGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.0e-1966.28Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTWATGIVRGDDVCWLHAVFRAKLAGGPGG
        RPRGNR SLQTG+LDKT                 +EIE+PVPDTLPTSAES  S+S   +TGIVRGDDVCWLHAVFRAK AGGPGG
Subjt:  RPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTWATGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]7.8e-1949.19Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATG
        +S  E ++ PRGNRSSLQTGELDKT                 +EIE+PVPDTLPTSAES  S+SSTW                              + G
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATG

Query:  IVRGDDVCWLHAVFRAKLAGGPGG
        IVRGDDVCWLH VFRAK+AGGPGG
Subjt:  IVRGDDVCWLHAVFRAKLAGGPGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]8.7e-1842.36Show/hide
Query:  PRGNRSSLQTGELDK-----------------TIEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATGIVRGDDVCW
        PRGNR  LQTGELDK                  +EIE+P+PDTLPTSAESS S+SSTW                              + GIVRGDDVCW
Subjt:  PRGNRSSLQTGELDK-----------------TIEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGDTCTASCCPGSGLPSESIKHASIPRWMGK
        LHA+FRAK AGGPGG             PS+S+       W G+
Subjt:  LHAVFRAKLAGGPGGDTCTASCCPGSGLPSESIKHASIPRWMGK

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.2e-1842.36Show/hide
Query:  PRGNRSSLQTGELDK-----------------TIEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATGIVRGDDVCW
        PRGNR  LQTGELDK                  +EIE+P+PDTLPTSAESS S+SSTW                              + GIVRGDDVCW
Subjt:  PRGNRSSLQTGELDK-----------------TIEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGDTCTASCCPGSGLPSESIKHASIPRWMGK
        LHA+FRAK AGGPGG             PS+S+       W G+
Subjt:  LHAVFRAKLAGGPGGDTCTASCCPGSGLPSESIKHASIPRWMGK

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.4e-2151.54Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------
        LFGL Y EG KRPRGNR+SLQTGELDKT                 +EIE+PVPDTLPTSAESS S+SSTW                              
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------

Query:  ---ATGIVRGDDVCWLHAVFRAKLAGGPGG
           +T IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ---ATGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein2.5e-2346.75Show/hide
Query:  IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTIEIEVPVPDTLPTSAESSRSSSSTW---
        I K +AKPAIAES  N      LFGLSY E ++                       PRGNR +L TG+LDKT+EIE+PVPDTLPTSAESS+S+SSTW   
Subjt:  IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTIEIEVPVPDTLPTSAESSRSSSSTW---

Query:  ---------------------------ATGIVRGDDVCWLHAVFRAKLAGGPGG
                                   + GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ---------------------------ATGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VIY9 Uncharacterized protein3.8e-1949.19Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATG
        +S  E ++ PRGNRSSLQTGELDKT                 +EIE+PVPDTLPTSAES  S+SSTW                              + G
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTW------------------------------ATG

Query:  IVRGDDVCWLHAVFRAKLAGGPGG
        IVRGDDVCWLH VFRAK+AGGPGG
Subjt:  IVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.9e-1966.28Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTWATGIVRGDDVCWLHAVFRAKLAGGPGG
        RPRGNR SLQTG+LDKT                 +EIE+PVPDTLPTSAES  S+S   +TGIVRGDDVCWLHAVFRAK AGGPGG
Subjt:  RPRGNRSSLQTGELDKT-----------------IEIEVPVPDTLPTSAESSRSSSSTWATGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGAGAAAATGATCCTAGAGAAGTCTCGGGTTTACACGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAGGAT
AGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAA
ATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAATAGAGATCGAGGTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
TGGGCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATACATGCACGGCTTCGTGTTGCCC
TGGGAGCGGCCTCCCTTCGGAGAGCATTAAGCATGCATCAATACCAAGGTGGATGGGGAAAGTGTTCATAGTAAATGGAAGAAGAACGCGTGCAACGTATCTTGCGGTCT
CCACCCCTAGGTTGCAACGTGAGATTCCTATGATCCGCCTGCGTGTCGCCCTAGGAGCGACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGCGAACTCCA
GAAATGGATAGGATCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGAGAAAATGATCCTAGAGAAGTCTCGGGTTTACACGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAGGAT
AGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAA
ATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAATAGAGATCGAGGTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
TGGGCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATACATGCACGGCTTCGTGTTGCCC
TGGGAGCGGCCTCCCTTCGGAGAGCATTAAGCATGCATCAATACCAAGGTGGATGGGGAAAGTGTTCATAGTAAATGGAAGAAGAACGCGTGCAACGTATCTTGCGGTCT
CCACCCCTAGGTTGCAACGTGAGATTCCTATGATCCGCCTGCGTGTCGCCCTAGGAGCGACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGCGAACTCCA
GAAATGGATAGGATCACTTAG
Protein sequenceShow/hide protein sequence
MTRENDPREVSGLHEHFKERVKEEEEEEFRGLRLKRIGKAHAKPAIAESVFNLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTIEIEVPVPDTLPTSAESSRSSSST
WATGIVRGDDVCWLHAVFRAKLAGGPGGDTCTASCCPGSGLPSESIKHASIPRWMGKVFIVNGRRTRATYLAVSTPRLQREIPMIRLRVALGATIPSEGLIIGFGTSRTP
EMDRIT