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Spg036979 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036979
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold5:25848152..25850103
RNA-Seq ExpressionSpg036979
SyntenySpg036979
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.9e-1646.88Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW
        +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAESSRS+SS+  +                             W
Subjt:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW

Query:  ISLEEDDICWLHVIFRTKLAGGPGGGVT
        I +  DD+CWLH IFR K AGGPGGGVT
Subjt:  ISLEEDDICWLHVIFRTKLAGGPGGGVT

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.0e-1243.9Show/hide
Query:  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEE
        +T SVLRDND VVSAG            RAPL +R                         + + VEIEL +PDTLPTSAESS S+S S         +  
Subjt:  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEE

Query:  DDICWLHVIFRTKLAGGPGGGVT
        DD+CWLHV+FR K  GGPGG VT
Subjt:  DDICWLHVIFRTKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-1351.04Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV
        +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +        E  W++  + EDD+CWLH +FR K AGGPGGGV
Subjt:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.9e-1646.88Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW
        +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAESSRS+SS+  +                             W
Subjt:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW

Query:  ISLEEDDICWLHVIFRTKLAGGPGGGVT
        I +  DD+CWLH IFR K AGGPGGGVT
Subjt:  ISLEEDDICWLHVIFRTKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-1351.04Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV
        +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +        E  W++  + EDD+CWLH +FR K AGGPGGGV
Subjt:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.9e-1646.88Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW
        +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAESSRS+SS+  +                             W
Subjt:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW

Query:  ISLEEDDICWLHVIFRTKLAGGPGGGVT
        I +  DD+CWLH IFR K AGGPGGGVT
Subjt:  ISLEEDDICWLHVIFRTKLAGGPGGGVT

A0A5A7VGQ5 Uncharacterized protein1.5e-1243.9Show/hide
Query:  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEE
        +T SVLRDND VVSAG            RAPL +R                         + + VEIEL +PDTLPTSAESS S+S S         +  
Subjt:  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEE

Query:  DDICWLHVIFRTKLAGGPGGGVT
        DD+CWLHV+FR K  GGPGG VT
Subjt:  DDICWLHVIFRTKLAGGPGGGVT

A0A5A7VMG9 Reverse transcriptase1.3e-1351.04Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV
        +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +        E  W++  + EDD+CWLH +FR K AGGPGGGV
Subjt:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV

A0A5D3BTP3 Reverse transcriptase2.9e-1646.88Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW
        +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAESSRS+SS+  +                             W
Subjt:  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------------------------EGQW

Query:  ISLEEDDICWLHVIFRTKLAGGPGGGVT
        I +  DD+CWLH IFR K AGGPGGGVT
Subjt:  ISLEEDDICWLHVIFRTKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.3e-1351.04Show/hide
Query:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV
        +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +        E  W++  + EDD+CWLH +FR K AGGPGGGV
Subjt:  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ--------EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCAAGTGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTTAA
GTCTACAACGAAGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGATTTATACGTCTGGAGGTAGAGATCGAGCTCCCGATGC
CTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTCAAAGTTTCAGGAGGGTCAATGGATATCGTTAGAGGAGGACGATATTTGTTGGCTTCATGTC
ATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCAAGTGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTTAA
GTCTACAACGAAGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGATTTATACGTCTGGAGGTAGAGATCGAGCTCCCGATGC
CTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTCAAAGTTTCAGGAGGGTCAATGGATATCGTTAGAGGAGGACGATATTTGTTGGCTTCATGTC
ATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTGTGA
Protein sequenceShow/hide protein sequence
MSAVRRVQLSIRSHCDQVAKRLLRFRSLERCWRRTVKSTTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEEDDICWLHV
IFRTKLAGGPGGGVTV