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Spg036980 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036980
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:27672096..27679829
RNA-Seq ExpressionSpg036980
SyntenySpg036980
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-1953.7Show/hide
Query:  LFESGKSGKPRGNRSSLRTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLFSVQEGRQVS----------LEEDDVRWLHAIFRAK
        +F    S  PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY E V++  + +   + R  S          +  DD+ WLHA+F AK
Subjt:  LFESGKSGKPRGNRSSLRTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLFSVQEGRQVS----------LEEDDVRWLHAIFRAK

Query:  LAGGPGGG
         AG PGGG
Subjt:  LAGGPGGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.6e-1941.57Show/hide
Query:  ESGKSGKPRGNRSSLRTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQEGRQVS
        E+ KSG PRGNR SL+TR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY E V++             ++++F+V  G    
Subjt:  ESGKSGKPRGNRSSLRTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQEGRQVS

Query:  LEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGK---QAKAEATVDARNLRALGDIGNLVTVRGAPAATGRRFGGEKKKE
        +  DDV WLHA+FRAK  GGPGGG    G      Q +AE+   AR+   +G        R  P+   + +G E+ K+
Subjt:  LEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGK---QAKAEATVDARNLRALGDIGNLVTVRGAPAATGRRFGGEKKKE

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1843.64Show/hide
Query:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ
        ESGKSGK     RGNRSSL++ +L  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY E V++             ++++FSV 
Subjt:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ

Query:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG
         G    +  DDV WLHA+FRAK  GGPGGG   +       A+   DA  +R    I   V ++G
Subjt:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.8e-1844.76Show/hide
Query:  WFPLVFQAFWVVQVESEALFESGKSGKPRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLF
        W  + F    V++V    L        PRGNRSSL+T +L KT                 VEIELPVPDTLPTSAES  S+SSTW+ELY EFV++  + +
Subjt:  WFPLVFQAFWVVQVESEALFESGKSGKPRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLF

Query:  SVQEGRQVS----------LEEDDVRWLHAIFRAKLAGGPGGG
           + R  S          +  DDV WLH +FRAK+AGGPGGG
Subjt:  SVQEGRQVS----------LEEDDVRWLHAIFRAKLAGGPGGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]8.1e-1843.64Show/hide
Query:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ
        ESGKSGK     RGNRSSL++ +L  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY E V++             ++++FSV 
Subjt:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ

Query:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG
         G    +  DDV WLHA+FRAK  GGPGGG   +       A+   DA  +R    I   V ++G
Subjt:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein9.4e-2053.7Show/hide
Query:  LFESGKSGKPRGNRSSLRTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLFSVQEGRQVS----------LEEDDVRWLHAIFRAK
        +F    S  PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY E V++  + +   + R  S          +  DD+ WLHA+F AK
Subjt:  LFESGKSGKPRGNRSSLRTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLFSVQEGRQVS----------LEEDDVRWLHAIFRAK

Query:  LAGGPGGG
         AG PGGG
Subjt:  LAGGPGGG

A0A5A7UT17 CCHC-type domain-containing protein4.6e-1941.57Show/hide
Query:  ESGKSGKPRGNRSSLRTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQEGRQVS
        E+ KSG PRGNR SL+TR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY E V++             ++++F+V  G    
Subjt:  ESGKSGKPRGNRSSLRTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQEGRQVS

Query:  LEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGK---QAKAEATVDARNLRALGDIGNLVTVRGAPAATGRRFGGEKKKE
        +  DDV WLHA+FRAK  GGPGGG    G      Q +AE+   AR+   +G        R  P+   + +G E+ K+
Subjt:  LEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGK---QAKAEATVDARNLRALGDIGNLVTVRGAPAATGRRFGGEKKKE

A0A5A7V9N3 Reverse transcriptase3.9e-1843.64Show/hide
Query:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ
        ESGKSGK     RGNRSSL++ +L  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY E V++             ++++FSV 
Subjt:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ

Query:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG
         G    +  DDV WLHA+FRAK  GGPGGG   +       A+   DA  +R    I   V ++G
Subjt:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG

A0A5A7VIY9 Uncharacterized protein1.4e-1844.76Show/hide
Query:  WFPLVFQAFWVVQVESEALFESGKSGKPRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLF
        W  + F    V++V    L        PRGNRSSL+T +L KT                 VEIELPVPDTLPTSAES  S+SSTW+ELY EFV++  + +
Subjt:  WFPLVFQAFWVVQVESEALFESGKSGKPRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLF

Query:  SVQEGRQVS----------LEEDDVRWLHAIFRAKLAGGPGGG
           + R  S          +  DDV WLH +FRAK+AGGPGGG
Subjt:  SVQEGRQVS----------LEEDDVRWLHAIFRAKLAGGPGGG

A0A5D3DSY7 Putative Retrotransposon protein3.9e-1843.64Show/hide
Query:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ
        ESGKSGK     RGNRSSL++ +L  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY E V++             ++++FSV 
Subjt:  ESGKSGK----PRGNRSSLRTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYI-------------VNVLFSVQ

Query:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG
         G    +  DDV WLHA+FRAK  GGPGGG   +       A+   DA  +R    I   V ++G
Subjt:  EGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG

SwissProt top hitse value%identityAlignment
P25011 G2/mitotic-specific cyclin S13-61.8e-0438.1Show/hide
Query:  GEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGRR-----FGGE--KKKEKVGAAGREEREVIMITYFKPTVGDK
        GEA +GGGKQ K     D RN +ALGDIGNL  VRG   A   R     FG +     +   AA   +R+        P V ++
Subjt:  GEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGRR-----FGGE--KKKEKVGAAGREEREVIMITYFKPTVGDK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAGTAAGTCGACCCTTCACAGGTTGTTCGTAACTAGAGCTAGGTCAAATGTCCGTGTTACCCCTGAAGTTACATCTTTGTTCCTTAAGTCTCTAGCTGAGTCCCT
AATGAACAATCGGTTTGTGGTCCCACCACTAAACCTAAAACCTCTCGGGCCAATGAGAGGGCGGGATCCCTTTGTTCACGTTCCGGAAGCACAGGATTTTCGAGCAAAGC
AGGAGGATCTCTGGTTTCCTCTGGTGTTTCAAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGAATCTGGAAAATCTGGAAAGCCAAGAGGAAATAGGTCG
AGTCTACGGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACTCTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGA
GTTGTATATTGAGTTCGTCTATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCGGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCATGCCATCTTTCGGG
CTAAGCTAGCAGGTGGTCCGGGAGGGGGTGAGGCAGCGATCGGCGGAGGAAAGCAGGCGAAAGCCGAGGCGACGGTGGATGCGAGGAACCTTCGAGCATTGGGCGATATT
GGGAATCTGGTAACTGTTCGAGGAGCTCCGGCGGCGACGGGGAGGAGATTCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGGCGGGGAGAGAAGAGAGGGAAGTTAT
TATGATTACTTACTTCAAGCCAACGGTAGGGGATAAAGCACGAGGACCAAAATTGGATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTAGTAAGTCGACCCTTCACAGGTTGTTCGTAACTAGAGCTAGGTCAAATGTCCGTGTTACCCCTGAAGTTACATCTTTGTTCCTTAAGTCTCTAGCTGAGTCCCT
AATGAACAATCGGTTTGTGGTCCCACCACTAAACCTAAAACCTCTCGGGCCAATGAGAGGGCGGGATCCCTTTGTTCACGTTCCGGAAGCACAGGATTTTCGAGCAAAGC
AGGAGGATCTCTGGTTTCCTCTGGTGTTTCAAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGAATCTGGAAAATCTGGAAAGCCAAGAGGAAATAGGTCG
AGTCTACGGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACTCTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGA
GTTGTATATTGAGTTCGTCTATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCGGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCATGCCATCTTTCGGG
CTAAGCTAGCAGGTGGTCCGGGAGGGGGTGAGGCAGCGATCGGCGGAGGAAAGCAGGCGAAAGCCGAGGCGACGGTGGATGCGAGGAACCTTCGAGCATTGGGCGATATT
GGGAATCTGGTAACTGTTCGAGGAGCTCCGGCGGCGACGGGGAGGAGATTCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGGCGGGGAGAGAAGAGAGGGAAGTTAT
TATGATTACTTACTTCAAGCCAACGGTAGGGGATAAAGCACGAGGACCAAAATTGGATGTTTAA
Protein sequenceShow/hide protein sequence
MISKSTLHRLFVTRARSNVRVTPEVTSLFLKSLAESLMNNRFVVPPLNLKPLGPMRGRDPFVHVPEAQDFRAKQEDLWFPLVFQAFWVVQVESEALFESGKSGKPRGNRS
SLRTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVYIVNVLFSVQEGRQVSLEEDDVRWLHAIFRAKLAGGPGGGEAAIGGGKQAKAEATVDARNLRALGDI
GNLVTVRGAPAATGRRFGGEKKKEKVGAAGREEREVIMITYFKPTVGDKARGPKLDV