; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036990 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036990
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:27533556..27537229
RNA-Seq ExpressionSpg036990
SyntenySpg036990
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]3.9e-1249.06Show/hide
Query:  LIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASG
        +++  I+ + NL  PRGNR SLQT +L KT                 VEIELPV DTLPMSAESS S+S S        ++ EDDV WLH +FR K A G
Subjt:  LIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASG

Query:  PGGVVT
        PGG VT
Subjt:  PGGVVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-1146.53Show/hide
Query:  LPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQWVLLEEDDVRWLHAIFRTKLASGPGGV
        LPRGNR +L T KL KTVEIELPVPDTLP SAESS+S+SS+  +                          EG   ++  DD+ WLHA+F  K A  PGG 
Subjt:  LPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQWVLLEEDDVRWLHAIFRTKLASGPGGV

Query:  V
        V
Subjt:  V

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.3e-1254.35Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT
        PRGNR SLQT KL KT                 VEIELPVPDTLP SAES  S+S ST       ++  DDV WLHA+FR K A GPGG VT
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]5.6e-1140Show/hide
Query:  FGNLIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ-----------------------
        F  +++  I+ + NL  PRGNRSSLQT +L KT                 VEIELPVPDTLP SAES  S+SS+  +                       
Subjt:  FGNLIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ-----------------------

Query:  ---EGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT
           EG   ++  DDV WLH +FR K+A GPGG VT
Subjt:  ---EGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]9.5e-1173.21Show/hide
Query:  MFGNLIQFPITFMNNLPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSS
        M   LIQ+P TFMN  PRGNR S QT KL KTVEIELPVPDTLP SAESS S+SS+
Subjt:  MFGNLIQFPITFMNNLPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSS

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein5.4e-1246.53Show/hide
Query:  LPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQWVLLEEDDVRWLHAIFRTKLASGPGGV
        LPRGNR +L T KL KTVEIELPVPDTLP SAESS+S+SS+  +                          EG   ++  DD+ WLHA+F  K A  PGG 
Subjt:  LPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQWVLLEEDDVRWLHAIFRTKLASGPGGV

Query:  V
        V
Subjt:  V

A0A5A7VIY9 Uncharacterized protein2.7e-1140Show/hide
Query:  FGNLIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ-----------------------
        F  +++  I+ + NL  PRGNRSSLQT +L KT                 VEIELPVPDTLP SAES  S+SS+  +                       
Subjt:  FGNLIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ-----------------------

Query:  ---EGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT
           EG   ++  DDV WLH +FR K+A GPGG VT
Subjt:  ---EGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.1e-1254.35Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT
        PRGNR SLQT KL KT                 VEIELPVPDTLP SAES  S+S ST       ++  DDV WLHA+FR K A GPGG VT
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASGPGGVVT

A0A5D3BET3 Uncharacterized protein4.6e-1173.21Show/hide
Query:  MFGNLIQFPITFMNNLPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSS
        M   LIQ+P TFMN  PRGNR S QT KL KTVEIELPVPDTLP SAESS S+SS+
Subjt:  MFGNLIQFPITFMNNLPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSS

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.9e-1249.06Show/hide
Query:  LIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASG
        +++  I+ + NL  PRGNR SLQT +L KT                 VEIELPV DTLPMSAESS S+S S        ++ EDDV WLH +FR K A G
Subjt:  LIQFPITFMNNL--PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASG

Query:  PGGVVT
        PGG VT
Subjt:  PGGVVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGAAATCTGATTCAATTTCCTATAACTTTCATGAATAATTTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATTGTTAGAGGAAGATGATGTCCGTTGGC
TTCACGCCATCTTCCGAACTAAGCTAGCAAGTGGTCCGGGAGGGGTTGTGACACACTGTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGAAATCTGATTCAATTTCCTATAACTTTCATGAATAATTTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATTGTTAGAGGAAGATGATGTCCGTTGGC
TTCACGCCATCTTCCGAACTAAGCTAGCAAGTGGTCCGGGAGGGGTTGTGACACACTGTGCATAG
Protein sequenceShow/hide protein sequence
MFGNLIQFPITFMNNLPRGNRSSLQTRKLAKTVEIELPVPDTLPMSAESSRSSSSSTFQEGQWVLLEEDDVRWLHAIFRTKLASGPGGVVTHCA