CuGenDBv2

Gene ID	Spg036995
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gypsy/ty3 element polyprotein
Genome location	scaffold5:27856149..27858804
RNA-Seq Expression	Spg036995
Synteny	Spg036995
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036997.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]

2.1e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

KAA0038377.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]

2.1e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

TYK10423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.1e-24

43.62

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Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

TYK17386.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]

2.1e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.1e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9X9 Gypsy/ty3 element polyprotein

1.0e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

A0A5A7UV13 Gypsy/ty3 element polyprotein

1.0e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

A0A5D3BD16 Ty3/gypsy retrotransposon protein

1.0e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

A0A5D3CEX8 Ty3/gypsy retrotransposon protein

1.0e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

A0A5D3DZ01 Gypsy/ty3 element polyprotein

1.0e-24

43.62

Show/hide

Query:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF
        ++ +E ++ +VQ+IP+LE+++E +          + R   SS  T     K+K + ++ VD D EGE S  LE    Q R K K +EMP+F+GE PD W 
Subjt:  DQAMEELQSKVQKIPILEQSIEHI----------KGRNQASSSAT-----KQKEKVDEEVDSDPEGEESYLLEE-PWQRRGKLKNVEMPIFSGEHPDAWF

Query:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        +RAE YFQ+H L ++EK+ +AIVS EG+ L W+RWA NR+RFR+W+EL+
Subjt:  FRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G67020.1 unknown protein

2.0e-09

23.93

Show/hide

Query:  DDTKKDSR---NGWKR--------DQAMEELQSKVQKIPILEQSIEHIKGR--NQASSSATKQKEKVDEEVDSDPEGEESYLLEEPWQRRGKLKNVEMPI
        D+T+++ +    G+KR        ++ +E + S ++++    + +E  +G+   Q   S    +      +     GE   LL+    R   ++ +EMP+
Subjt:  DDTKKDSR---NGWKR--------DQAMEELQSKVQKIPILEQSIEHIKGR--NQASSSATKQKEKVDEEVDSDPEGEESYLLEEPWQRRGKLKNVEMPI

Query:  FSGEHPDAWFFRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELRVLIL
        F G     WF + ER+F++ +  D +K+ +  +S EG AL W+   M+   FR+W      +L
Subjt:  FSGEHPDAWFFRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELRVLIL

AT3G44713.1 unknown protein

7.5e-04

36.51

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Query:  PIFSGEHPD--AWFFRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR
        P F+G   +  +W    E +F     TD EKM +A    EGEA +W+        FR+WE LR
Subjt:  PIFSGEHPD--AWFFRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELR

Sequences

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CDS sequence

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ATGTTGTTGGAGTCGTGTCCCAATCTTGTGTTGTCTTTTGTTCGCCAGAATGCTTTTCTTGCTGAAATTTTATTCTGCCTTCTTACTGGACTTTCATCTTGCTGCACTCT
CCTTGGCGATTTTGTGCTTCTTTTCCCCAGTTTGTTTCCGCCCTGGATTCAATGGAAACCTTACAAATACATTAGAGCCAAACCTGGGAAGGGTTGGCAAGATGACACAA
AAAAAGACTCGAGGAACGGTTGGAAGCGTGATCAAGCAATGGAAGAATTGCAATCCAAGGTCCAGAAAATTCCAATTCTGGAACAGTCAATTGAACACATCAAAGGAAGG
AACCAGGCTTCATCCTCGGCAACAAAGCAGAAGGAAAAGGTGGACGAAGAAGTGGATTCGGATCCGGAAGGTGAAGAATCATACCTATTGGAAGAACCATGGCAGCGGCG
TGGAAAACTTAAGAATGTTGAAATGCCCATATTCTCGGGGGAACATCCAGATGCTTGGTTTTTTCGAGCAGAAAGATATTTTCAGATTCATCAGTTGACAGATAAAGAGA
AGATGACAGTGGCAATAGTAAGTTTTGAAGGAGAAGCTCTCTCATGGTACCGTTGGGCAATGAACCGTCAAAGGTTTCGAAATTGGGAGGAGTTAAGAGTCTTAATTTTA
GGAGAGTAA

mRNA sequence

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Protein sequence

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MLLESCPNLVLSFVRQNAFLAEILFCLLTGLSSCCTLLGDFVLLFPSLFPPWIQWKPYKYIRAKPGKGWQDDTKKDSRNGWKRDQAMEELQSKVQKIPILEQSIEHIKGR
NQASSSATKQKEKVDEEVDSDPEGEESYLLEEPWQRRGKLKNVEMPIFSGEHPDAWFFRAERYFQIHQLTDKEKMTVAIVSFEGEALSWYRWAMNRQRFRNWEELRVLIL
GE

Spg036995 (gene) of Sponge gourd (cylindrica) v1 genome