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Spg037014 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037014
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptiontRNA pseudouridine(55) synthase
Genome locationscaffold6:29164842..29167088
RNA-Seq ExpressionSpg037014
SyntenySpg037014
Gene Ontology termsGO:0031119 - tRNA pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR039894 - tRNA pseudouridine synthase Pus10-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34134.1 hypothetical protein [Cucumis melo subsp. melo]9.9e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
KAA0064623.1 putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa]9.9e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
TYK19969.1 putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa]9.9e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
XP_008452922.1 PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo]9.9e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
XP_038897427.1 tRNA pseudouridine synthase Pus10 [Benincasa hispida]5.8e-5471.52Show/hide
Query:  MASERDEVQADPEATP------------------------MPSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLG
        MA+E+D VQADPEATP                        MPSHA  DLLSIGVCIPCIIRLSGIERHNYSFSLS PILGSDK A+D + DRSTC LCLG
Subjt:  MASERDEVQADPEATP------------------------MPSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLG

Query:  ILQFSYIDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        +LQFSYIDDKG+++++KGADDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  ILQFSYIDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
TrEMBL top hitse value%identityAlignment
A0A0A0L378 tRNA pseudouridine(55) synthase9.0e-5373.03Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEAT +                  PS+A KDLLSIGVCIPCIIRLSGIERH+YSFSLSAPILGSD  A+DD  DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
A0A1S3BUF4 tRNA pseudouridine(55) synthase4.8e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
A0A5A7V921 tRNA pseudouridine(55) synthase4.8e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
A0A5D3D906 tRNA pseudouridine(55) synthase4.8e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
E5GCD5 tRNA pseudouridine(55) synthase4.8e-5473.68Show/hide
Query:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY
        MA+E+DEVQA+PEATP+                  PS+A KDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSD  A++D+ DR+TC LCLGILQFSY
Subjt:  MASERDEVQADPEATPM------------------PSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSY

Query:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
        IDDKG F++ KG DDLAVSISEMVKKEGH ID FSLEVSVPSIILENEK VW
Subjt:  IDDKGSFVEYKGADDLAVSISEMVKKEGHHIDGFSLEVSVPSIILENEKLVW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20410.1 Pseudouridine synthase family protein1.4e-1839.2Show/hide
Query:  ATPMPSHAMKDLLSIGVCIPCIIRLSGIERHNYSF-SLSAPIL------GSDKYAVDDNKDRSTCRLCLGILQFSYIDDKGSFVEYKGADDLAVSISEMV
        A  + + A+KDLLS+GVC  CI RL  +E  +    S+S   L      G D+ +  ++   + C +CLGILQF + D K   V+   + D    I+++V
Subjt:  ATPMPSHAMKDLLSIGVCIPCIIRLSGIERHNYSF-SLSAPIL------GSDKYAVDDNKDRSTCRLCLGILQFSYIDDKGSFVEYKGADDLAVSISEMV

Query:  KKEGHHIDGFSLEVSVPSIILENEK
        K++ H  D F LEVSVPS I+ENE+
Subjt:  KKEGHHIDGFSLEVSVPSIILENEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCGAACGGGACGAAGTGCAAGCTGATCCTGAGGCGACGCCAATGCCTTCTCACGCGATGAAAGACCTGTTGTCGATTGGTgtatgcatcccctgcatcattcg
cctatctggcatcgaaagacacaattattctttttcactgtctgcaccaatcttaggttctgataagtatgcagttgatgataataaagatagaagcacttgcaggctat
gtttaggtattttgcagttcagttacattgacgataaaggtagctttgtagaatataaaggagctgatgatttagctgtctcaatttctgagatggtaaagaaagagggc
catcatattgatggcttttctcttgaggtgtcagttccttcgatcattttggagaatgagaagcttgtttggtga
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCGAACGGGACGAAGTGCAAGCTGATCCTGAGGCGACGCCAATGCCTTCTCACGCGATGAAAGACCTGTTGTCGATTGGTgtatgcatcccctgcatcattcg
cctatctggcatcgaaagacacaattattctttttcactgtctgcaccaatcttaggttctgataagtatgcagttgatgataataaagatagaagcacttgcaggctat
gtttaggtattttgcagttcagttacattgacgataaaggtagctttgtagaatataaaggagctgatgatttagctgtctcaatttctgagatggtaaagaaagagggc
catcatattgatggcttttctcttgaggtgtcagttccttcgatcattttggagaatgagaagcttgtttggtga
Protein sequenceShow/hide protein sequence
MASERDEVQADPEATPMPSHAMKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDKYAVDDNKDRSTCRLCLGILQFSYIDDKGSFVEYKGADDLAVSISEMVKKEG
HHIDGFSLEVSVPSIILENEKLVW