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Spg037024 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037024
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:29434257..29436661
RNA-Seq ExpressionSpg037024
SyntenySpg037024
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-1758.62Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS
        VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGGVT S
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1757.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]8.1e-1758.14Show/hide
Query:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-1758.62Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS
        VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGGVT S
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.8e-1757.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.0e-1758.62Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS
        VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGGVT S
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS

A0A5A7V9N3 Reverse transcriptase1.3e-1757.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein3.9e-1758.14Show/hide
Query:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5D3DR18 Gag/pol protein3.0e-1758.62Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS
        VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGGVT S
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVS----------LEEDDVRWLHAIFRAKLAGGPGGGVTGS

A0A5D3DSY7 Putative Retrotransposon protein1.3e-1757.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
CAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATG
TCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGGAGTGCAGCTACAGGCTATAGTGGAGTGTCCCGAAACTTAACGAAT
GTTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
CAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATG
TCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGGAGTGCAGCTACAGGCTATAGTGGAGTGTCCCGAAACTTAACGAAT
GTTGAATAA
Protein sequenceShow/hide protein sequence
MYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGVTGSAATGYSGVSRNLTN
VE