; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037041 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037041
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:29124968..29126235
RNA-Seq ExpressionSpg037041
SyntenySpg037041
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0548.84Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP
        PRGNR SLQ  E+ K          T   PL TLSVL DND VVSAG+APL +R     TG         +   VEIEL VPD LP
Subjt:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP

KAA0037923.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-0840.82Show/hide
Query:  RGVYGQIHLESHFHSFKPRGNRSSLQARELAK---PPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHK-VEIELLVPDKL
        RG+    + E   H F+ R  + S Q ++LA+    PEA+WYRVH G+IPLLTLSVLR+NDVV       +     +   G+ L K VEI L + + +
Subjt:  RGVYGQIHLESHFHSFKPRGNRSSLQARELAK---PPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHK-VEIELLVPDKL

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.7e-0442.99Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAG------------RAPLHRRAN-----------------VGCTGRALHKVEIEL
        PRGNRSSLQ  EL K          T    L TLSVLRDND VVSAG            RAPLHRR +                 V      +  VEIEL
Subjt:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAG------------RAPLHRRAN-----------------VGCTGRALHKVEIEL

Query:  LVPDKLP
         VPD LP
Subjt:  LVPDKLP

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0548.84Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP
        PRGNR SLQ  E+ K          T   PL TLSVL DND VVSAG+APL +R     TG         +   VEIEL VPD LP
Subjt:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.4e-0842.99Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVH------------TGYIPLLTLSVLRDNDVVVSAGRAPLHR-------------RANVGCTGRALHKV----EIEL
        PRGNRSSLQ  +L K   ++ Y                   PL TLSVLRDND VVS G+    +               NVGCTGR LH +    EIEL
Subjt:  PRGNRSSLQARELAKPPEAVWYRVH------------TGYIPLLTLSVLRDNDVVVSAGRAPLHR-------------RANVGCTGRALHKV----EIEL

Query:  LVPDKLP
        LVPD LP
Subjt:  LVPDKLP

TrEMBL top hitse value%identityAlignment
A0A5A7T4K8 Reverse transcriptase1.2e-0840.82Show/hide
Query:  RGVYGQIHLESHFHSFKPRGNRSSLQARELAK---PPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHK-VEIELLVPDKL
        RG+    + E   H F+ R  + S Q ++LA+    PEA+WYRVH G+IPLLTLSVLR+NDVV       +     +   G+ L K VEI L + + +
Subjt:  RGVYGQIHLESHFHSFKPRGNRSSLQARELAK---PPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHK-VEIELLVPDKL

A0A5A7T7M6 Reverse transcriptase5.7e-0648.84Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP
        PRGNR SLQ  E+ K          T   PL TLSVL DND VVSAG+APL +R     TG         +   VEIEL VPD LP
Subjt:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP

A0A5D3BTP3 Reverse transcriptase5.7e-0648.84Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP
        PRGNR SLQ  E+ K          T   PL TLSVL DND VVSAG+APL +R     TG         +   VEIEL VPD LP
Subjt:  PRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGR--------ALHKVEIELLVPDKLP

A0A5D3CAC6 Uncharacterized protein3.6e-0842.99Show/hide
Query:  PRGNRSSLQARELAKPPEAVWYRVH------------TGYIPLLTLSVLRDNDVVVSAGRAPLHR-------------RANVGCTGRALHKV----EIEL
        PRGNRSSLQ  +L K   ++ Y                   PL TLSVLRDND VVS G+    +               NVGCTGR LH +    EIEL
Subjt:  PRGNRSSLQARELAKPPEAVWYRVH------------TGYIPLLTLSVLRDNDVVVSAGRAPLHR-------------RANVGCTGRALHKV----EIEL

Query:  LVPDKLP
        LVPD LP
Subjt:  LVPDKLP

A0A5D3DV36 Retrotrans_gag domain-containing protein8.2e-0551.9Show/hide
Query:  KPRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHKVEIELLVPDKLP
        +PRGNR SLQ  EL K          T    L TLSVL DND VVSAGRA L +R       R   +VEIEL VPD LP
Subjt:  KPRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHKVEIELLVPDKLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTAAGTAGTTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAAAAACACGAATTTGGAATAGCTGTGTTCGGGGGGTTTATGGACAAATCCATTTGGAATCTCA
TTTTCATTCCTTCAAGCCAAGAGGAAATAGGTCAAGTCTACAGGCCAGGGAACTAGCCAAGCCTCCCGAGGCTGTATGGTACCGTGTGCACACAGGTTATATTCCATTGT
TAACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCAAACGTTGGTTGTACTGGGCGTGCCCTACACAAAGTAGAG
ATCGAGCTCCTGGTGCCTGATAAACTGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGTAAGTAGTTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAAAAACACGAATTTGGAATAGCTGTGTTCGGGGGGTTTATGGACAAATCCATTTGGAATCTCA
TTTTCATTCCTTCAAGCCAAGAGGAAATAGGTCAAGTCTACAGGCCAGGGAACTAGCCAAGCCTCCCGAGGCTGTATGGTACCGTGTGCACACAGGTTATATTCCATTGT
TAACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCAAACGTTGGTTGTACTGGGCGTGCCCTACACAAAGTAGAG
ATCGAGCTCCTGGTGCCTGATAAACTGCCATAG
Protein sequenceShow/hide protein sequence
MTVSSFNFRRKVEGSRKTRIWNSCVRGVYGQIHLESHFHSFKPRGNRSSLQARELAKPPEAVWYRVHTGYIPLLTLSVLRDNDVVVSAGRAPLHRRANVGCTGRALHKVE
IELLVPDKLP