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Spg037056 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037056
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold6:28439836..28446438
RNA-Seq ExpressionSpg037056
SyntenySpg037056
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]6.0e-0555.32Show/hide
Query:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
        + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI SF
Subjt:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.7e-0575.68Show/hide
Query:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
        VRV R PTQYAYHFGDK E G GNI TQDGI SF +L
Subjt:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
TYK01421.1 uncharacterized protein E5676_scaffold772G00040 [Cucumis melo var. makuwa]1.4e-0669.57Show/hide
Query:  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
        Q IVL FVWV VTR  TQYAYHF DK E G  NITT+DGI+SF  L
Subjt:  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]7.9e-0579.41Show/hide
Query:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
        VRV R PT+YAYHFGDK E GVGNI TQDGI SF
Subjt:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]6.0e-0548.28Show/hide
Query:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV
        + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI  F  L Y+   S+
Subjt:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV
TrEMBL top hitse value%identityAlignment
A0A5A7TKJ4 Gag/pol protein2.9e-0555.32Show/hide
Query:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
        + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI SF
Subjt:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
A0A5A7VFG5 Ty1-copia retrotransposon protein1.3e-0575.68Show/hide
Query:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
        VRV R PTQYAYHFGDK E G GNI TQDGI SF +L
Subjt:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
A0A5A7VKV9 Gag/pol protein3.8e-0579.41Show/hide
Query:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
        VRV R PT+YAYHFGDK E GVGNI TQDGI SF
Subjt:  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF
A0A5D3BNQ9 Uncharacterized protein7.0e-0769.57Show/hide
Query:  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
        Q IVL FVWV VTR  TQYAYHF DK E G  NITT+DGI+SF  L
Subjt:  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.9e-0548.28Show/hide
Query:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV
        + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI  F  L Y+   S+
Subjt:  DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCTATCTGCAAGGGATTGTCCTTTCATTTGTATGGGTGAGAGTGACCAGATCGCCGACTCAATATGCTTACCATTTTGGGGACAAGATCGAGGTGGGAGTTGG
AAACATAACAACACAAGATGGAATTTGGTCCTTCCGCATTTTGGTTTATTTGTCTACTTTATCGGTAATTGACATGCGGCGTGGGAGCGCACACCCTGCCCGAGTGCAAG
TAGGGCTTTCTTCTACTCAAGATCCCACGAATCTCGATATTCTGTCAGAAAGCCCAGTTTCGGCCGCAAAGTCAGGCATAAATCTTTGTGCAGTGCCTTGTAACTTCTGT
CTTCAGCTGGGACTACTTTCCTTATTGGTTTGCGAGTGCATTTCAAACACATCTTCCACATCTTCAGGACCAGAGTGGGAGCGAATCACACAATTTGGTACTAAATCAGG
CATTTTGGAGCATTTTCGAGCCAACTCAGAGTTTACAGATGAAGAGAAGGTGAGAAGACCCGACCGGACCATGGCAAGCCCGAAGTTTAGTGCCAATGAGTCAAAGTCTT
TTTACGAGCTACCAGTGGAACCTAATGGACCTGCAGATCAGAAGCTCCAACGATACGAGACTAATCGGCTTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTG
GGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTTATGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACTTGTGTTCAAAATAC
GGCAACGTCGAGACTCCAAGGGCAGCGTCTCGACGCTGTGAACTTTATATTTCGGGCGGATTTCGCGTCGGCGTCGAGACGCCAAGGGCAGCATCTCGACGCCAGCCTTG
ATTCTCGACTTGCTGCTTTAATTCTCGGTCTTGTCTCAATTCTTCTCGGTACGGTGCTACAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGG
TCTTTTCACCTCCTTGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCGTAAGGAGGATGCAGAATCCGAATTACCAAGAAGCACACCGGGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTCCTATCTGCAAGGGATTGTCCTTTCATTTGTATGGGTGAGAGTGACCAGATCGCCGACTCAATATGCTTACCATTTTGGGGACAAGATCGAGGTGGGAGTTGG
AAACATAACAACACAAGATGGAATTTGGTCCTTCCGCATTTTGGTTTATTTGTCTACTTTATCGGTAATTGACATGCGGCGTGGGAGCGCACACCCTGCCCGAGTGCAAG
TAGGGCTTTCTTCTACTCAAGATCCCACGAATCTCGATATTCTGTCAGAAAGCCCAGTTTCGGCCGCAAAGTCAGGCATAAATCTTTGTGCAGTGCCTTGTAACTTCTGT
CTTCAGCTGGGACTACTTTCCTTATTGGTTTGCGAGTGCATTTCAAACACATCTTCCACATCTTCAGGACCAGAGTGGGAGCGAATCACACAATTTGGTACTAAATCAGG
CATTTTGGAGCATTTTCGAGCCAACTCAGAGTTTACAGATGAAGAGAAGGTGAGAAGACCCGACCGGACCATGGCAAGCCCGAAGTTTAGTGCCAATGAGTCAAAGTCTT
TTTACGAGCTACCAGTGGAACCTAATGGACCTGCAGATCAGAAGCTCCAACGATACGAGACTAATCGGCTTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTG
GGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTTATGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACTTGTGTTCAAAATAC
GGCAACGTCGAGACTCCAAGGGCAGCGTCTCGACGCTGTGAACTTTATATTTCGGGCGGATTTCGCGTCGGCGTCGAGACGCCAAGGGCAGCATCTCGACGCCAGCCTTG
ATTCTCGACTTGCTGCTTTAATTCTCGGTCTTGTCTCAATTCTTCTCGGTACGGTGCTACAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGG
TCTTTTCACCTCCTTGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCGTAAGGAGGATGCAGAATCCGAATTACCAAGAAGCACACCGGGTTCATAG
Protein sequenceShow/hide protein sequence
MDSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSVIDMRRGSAHPARVQVGLSSTQDPTNLDILSESPVSAAKSGINLCAVPCNFC
LQLGLLSLLVCECISNTSSTSSGPEWERITQFGTKSGILEHFRANSEFTDEEKVRRPDRTMASPKFSANESKSFYELPVEPNGPADQKLQRYETNRLKLINQVSLHSLTV
GHSTKDPQLHSSHCRIFMCPRISTNTTSQSFTCVQNTATSRLQGQRLDAVNFIFRADFASASRRQGQHLDASLDSRLAALILGLVSILLGTVLQSSAFGVILQARFNTIG
SFHLLVVQDTEMAPKLRKEDAESELPRSTPGS