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Spg037059 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037059
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RNF144A-like
Genome locationscaffold6:28882920..28884933
RNA-Seq ExpressionSpg037059
SyntenySpg037059
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152679.1 E3 ubiquitin-protein ligase RNF144A-like [Momordica charantia]1.7e-0560.42Show/hide
Query:  MECDEFEKLRKGKGRADRRFDDDEVANQKKWKRCPDCKIYVEKVASIL
        MECDEF+KLRK  G         ++AN++KWKRCP CKIYVEKVA  L
Subjt:  MECDEFEKLRKGKGRADRRFDDDEVANQKKWKRCPDCKIYVEKVASIL
TrEMBL top hitse value%identityAlignment
A0A6J1DGR7 E3 ubiquitin-protein ligase RNF144A-like8.4e-0660.42Show/hide
Query:  MECDEFEKLRKGKGRADRRFDDDEVANQKKWKRCPDCKIYVEKVASIL
        MECDEF+KLRK  G         ++AN++KWKRCP CKIYVEKVA  L
Subjt:  MECDEFEKLRKGKGRADRRFDDDEVANQKKWKRCPDCKIYVEKVASIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G53690.1 RING/U-box superfamily protein4.1e-0551.06Show/hide
Query:  MECDEFEKLRKGKGRADRRFDDD----EVANQKKWKRCPDCKIYVEK
        M C+EF+KL      A+ R  DD     +A QKKWKRCP CK Y+EK
Subjt:  MECDEFEKLRKGKGRADRRFDDD----EVANQKKWKRCPDCKIYVEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGCGATGAATTTGAGAAATTGCGTAAGGGGAAAGGAAGAGCAGACAGACGATTTGATGACGATGAAGTTGCTAATCAAAAGAAATGGAAGAGATGTCCTGATTG
CAAAATTTATGTTGAGAAAGTTGCCTCCATATTACCTGCAAGTCCGCCGCCGCACGTCGATAACCGCCTCACGCTGCCGTCTTTCGCCGCCTCCGGTGAGTCTCCGTTCT
CCGCCGCGGCCACGTTCAGTCGCTCAGTCGCTCGTCGCCGCAGCCGCATTCAGCCGCTCAGTCGCACGCCGCCGCCGCCGCACAAATCTGTACGCAACTGCCGTTCAGAT
CTGTTTGTGTCCGTAGTGAGTGGTGGTCGAATTCGCAAAGGCGGAGTGAATTTGGAAACTGGACAGCAAGCAGTAGTTTCATTTGGATGCGAGAGCATGATAGTGTTTCA
TTATAGTTGGCTGGCAACGTATGTAGGCAATGAGAAGTTTGTGATTTCCCCGTTTAGAAGTGTGGTTGTCGTTCTTGTTCTTGAAATTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGCGATGAATTTGAGAAATTGCGTAAGGGGAAAGGAAGAGCAGACAGACGATTTGATGACGATGAAGTTGCTAATCAAAAGAAATGGAAGAGATGTCCTGATTG
CAAAATTTATGTTGAGAAAGTTGCCTCCATATTACCTGCAAGTCCGCCGCCGCACGTCGATAACCGCCTCACGCTGCCGTCTTTCGCCGCCTCCGGTGAGTCTCCGTTCT
CCGCCGCGGCCACGTTCAGTCGCTCAGTCGCTCGTCGCCGCAGCCGCATTCAGCCGCTCAGTCGCACGCCGCCGCCGCCGCACAAATCTGTACGCAACTGCCGTTCAGAT
CTGTTTGTGTCCGTAGTGAGTGGTGGTCGAATTCGCAAAGGCGGAGTGAATTTGGAAACTGGACAGCAAGCAGTAGTTTCATTTGGATGCGAGAGCATGATAGTGTTTCA
TTATAGTTGGCTGGCAACGTATGTAGGCAATGAGAAGTTTGTGATTTCCCCGTTTAGAAGTGTGGTTGTCGTTCTTGTTCTTGAAATTGATTGA
Protein sequenceShow/hide protein sequence
MECDEFEKLRKGKGRADRRFDDDEVANQKKWKRCPDCKIYVEKVASILPASPPPHVDNRLTLPSFAASGESPFSAAATFSRSVARRRSRIQPLSRTPPPPHKSVRNCRSD
LFVSVVSGGRIRKGGVNLETGQQAVVSFGCESMIVFHYSWLATYVGNEKFVISPFRSVVVVLVLEID