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Spg037089 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037089
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:52274485..52276022
RNA-Seq ExpressionSpg037089
SyntenySpg037089
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1455.14Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL
        G LVFSD LSI     +    L + I DK    GN PG  + +++   I+        P STLS LRDNDAVVEIELP+PDTLPTSAESS +NSSTW+EL
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL

Query:  YIESVHI
        Y ESVH+
Subjt:  YIESVHI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.6e-1655.56Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE
        G LVFSD LSIL     +  S     LD   G  G     L  +  S        T   P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+E
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1455.14Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL
        G LVFSD LSI     +    L + I DK    GN PG  + +++   I+        P STLS LRDNDAVVEIELP+PDTLPTSAESS +NSSTW+EL
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL

Query:  YIESVHI
        Y ESVH+
Subjt:  YIESVHI

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.6e-1655.56Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE
        G LVFSD LSIL     +  S     LD   G  G     L  +  S        T   P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+E
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1368.66Show/hide
Query:  SDIESEAIWYRVHTGYI-PWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        ++I S  ++  V T  I P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+ELY+E VH+
Subjt:  SDIESEAIWYRVHTGYI-PWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.0e-1555.14Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL
        G LVFSD LSI     +    L + I DK    GN PG  + +++   I+        P STLS LRDNDAVVEIELP+PDTLPTSAESS +NSSTW+EL
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL

Query:  YIESVHI
        Y ESVH+
Subjt:  YIESVHI

A0A5A7V9N3 Reverse transcriptase3.2e-1655.56Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE
        G LVFSD LSIL     +  S     LD   G  G     L  +  S        T   P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+E
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

A0A5D3DR18 Gag/pol protein6.0e-1555.14Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL
        G LVFSD LSI     +    L + I DK    GN PG  + +++   I+        P STLS LRDNDAVVEIELP+PDTLPTSAESS +NSSTW+EL
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKS--VGN-PGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVEL

Query:  YIESVHI
        Y ESVH+
Subjt:  YIESVHI

A0A5D3DSY7 Putative Retrotransposon protein3.2e-1655.56Show/hide
Query:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE
        G LVFSD LSIL     +  S     LD   G  G     L  +  S        T   P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+E
Subjt:  GSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPG----FLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

A0A5D3DX39 Reverse transcriptase6.7e-1468.66Show/hide
Query:  SDIESEAIWYRVHTGYI-PWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        ++I S  ++  V T  I P STLS LRDNDAVVEIELPVPDTLPTSAESS +NSSTW+ELY+E VH+
Subjt:  SDIESEAIWYRVHTGYI-PWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTGAAGGGTTTTTGGAATGGAAAATAGAGCACAGGATTTTCGAGCAAACCAGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCG
AATCAGAAGCTCTTTGGGTATGGCAATTCTGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGATATTGAGTCCGAGGCTATATGGTACCGTGTGCACACAGGTT
ATATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAC
TCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGCAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTGAAGGGTTTTTGGAATGGAAAATAGAGCACAGGATTTTCGAGCAAACCAGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCG
AATCAGAAGCTCTTTGGGTATGGCAATTCTGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGATATTGAGTCCGAGGCTATATGGTACCGTGTGCACACAGGTT
ATATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAC
TCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGCAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAA
Protein sequenceShow/hide protein sequence
MRSEGFLEWKIEHRIFEQTRGSLVFSDVLSILGCTSRIRSSLGMAILDKSVGNPGFLSSDIESEAIWYRVHTGYIPWSTLSELRDNDAVVEIELPVPDTLPTSAESSRTN
SSTWVELYIESVHIVNVLQGLDNIVLEVVVV