CuGenDBv2

Gene ID	Spg037092
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein starmaker-like isoform X1
Genome location	scaffold1:50875815..50876260
RNA-Seq Expression	Spg037092
Synteny	Spg037092
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0007064 - mitotic sister chromatid cohesion (biological process)
InterPro domains	IPR039776 - Sister chromatid cohesion protein Pds5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7029481.1 Sister chromatid cohesion protein PDS5-like B-B [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

XP_022961960.1 protein starmaker-like isoform X1 [Cucurbita moschata]

1.1e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

XP_022996452.1 protein starmaker-like isoform X1 [Cucurbita maxima]

1.1e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

XP_022996453.1 protein starmaker-like isoform X2 [Cucurbita maxima]

1.1e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

XP_023545878.1 E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HBT1 protein starmaker-like isoform X2

5.2e-20

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

A0A6J1HDP8 protein starmaker-like isoform X1

5.2e-20

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

A0A6J1K1Y9 protein starmaker-like isoform X1

5.2e-20

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

A0A6J1KAT2 protein starmaker-like isoform X2

5.2e-20

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSALTPSLKAL+SDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

A0A6J1KIV6 protein starmaker-like isoform X1

1.5e-19

58.56

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSAL PSLKALVSDQL RH DIDVKVA                                    +SDKSSRSYAKR S LETVAKVRS VVMLDLECDGL
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        IIEMFQHF+ +
Subjt:  IIEMFQHFVNS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G15940.1 Tudor/PWWP/MBT superfamily protein

6.8e-12

41.28

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        +Q AL P ++ALVS  L R+ D DV+V+                                   K++D SSRSY K    LETVAKVRS +VMLDLECD L
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFV
        ++EMFQ F+
Subjt:  IIEMFQHFV

AT1G80810.1 Tudor/PWWP/MBT superfamily protein

6.4e-10

38.33

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSAL PS  ALVS  L  H D DV+V+                                   K++D SSRSY K    L+ VAKV+S +VMLDLEC  L
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNSTSFNWTSHP
        I++MF++F     F  + HP
Subjt:  IIEMFQHFVNSTSFNWTSHP

AT1G80810.2 Tudor/PWWP/MBT superfamily protein

6.4e-10

38.33

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQSAL PS  ALVS  L  H D DV+V+                                   K++D SSRSY K    L+ VAKV+S +VMLDLEC  L
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNSTSFNWTSHP
        I++MF++F     F  + HP
Subjt:  IIEMFQHFVNSTSFNWTSHP

AT4G31880.1 LOCATED IN: cytosol, chloroplast

2.8e-18

48.65

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQ+ALTP +K LV  +L +H D+DVKVA                                    + DKSSRSYAKR S LETVAKVRS VVMLDLECD L
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        +IEMFQHF+ +
Subjt:  IIEMFQHFVNS

AT4G31880.2 LOCATED IN: cytosol

2.8e-18

48.65

Show/hide

Query:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL
        MQ+ALTP +K LV  +L +H D+DVKVA                                    + DKSSRSYAKR S LETVAKVRS VVMLDLECD L
Subjt:  MQSALTPSLKALVSDQLHRHLDIDVKVAYRPL-------------------------------KISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGL

Query:  IIEMFQHFVNS
        +IEMFQHF+ +
Subjt:  IIEMFQHFVNS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAAAGTGCGCTCACTCCATCTTTGAAAGCACTGGTTTCTGATCAGCTTCATAGGCATTTGGACATTGATGTCAAAGTTGCATATCGTCCTTTGAAAATCTCTGACAA
GTCAAGTCGATCATATGCAAAGAGGACATCCACTCTTGAAACCGTTGCAAAGGTTAGATCGCGTGTGGTCATGCTGGATTTGGAATGTGATGGATTGATCATTGAGATGT
TCCAACATTTCGTTAATTCAACCTCCTTCAATTGGACATCTCACCCATTACATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQSALTPSLKALVSDQLHRHLDIDVKVAYRPLKISDKSSRSYAKRTSTLETVAKVRSRVVMLDLECDGLIIEMFQHFVNSTSFNWTSHPLH

Spg037092 (gene) of Sponge gourd (cylindrica) v1 genome