; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037120 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037120
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:52015978..52017769
RNA-Seq ExpressionSpg037120
SyntenySpg037120
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]2.4e-3447.92Show/hide
Query:  KKGETSTSLVKPKVVKHEKCSP--VLQYVPLSWHKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDT
        +KGE STS  K  ++  EK S   +L+YVPLS  +KGESPF + P+ +K             KKLL+EG+ +P +RKG GYKS EP+ I R+ K KV D+
Subjt:  KKGETSTSLVKPKVVKHEKCSP--VLQYVPLSWHKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDT

Query:  NHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        NHITV EVD  +EKE   QR S F +IRP V R  VF+RLSV +T+ +  Q T+S  + S  +RL+M   KE+ T   L  TRPS FERL++
Subjt:  NHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.5e-3348.91Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEV
        K E STS  K  ++ +E  S  P+L+YVPLS  KKGESPF E P+ +K    ++LKE +++     T+KGLGYKS EP+RITR+GK KV D+NHITV+EV
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEV

Query:  DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        D  + KE   QRTS F RI P VARA VF+RLS+ E K +  Q T++  + S F+RL++   +E+        T+PS FERL++
Subjt:  DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]3.1e-3443.44Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++  EK S  P+L+YVPLS  KKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGK
        +P +RKGLGYKS EP+RITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E K +  Q T++  + S F+RL++   +
Subjt:  LPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGK

Query:  EESTFSTLNVTRPSTFERLNM
        E+    T   T+PS FERL++
Subjt:  EESTFSTLNVTRPSTFERLNM

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-3329.79Show/hide
Query:  SQEKYDSIEDENEGWILVVRRKKQKQSYARKESRLFRDNKRKVKSQRKKGKKKSRRSKPVMEEGEDFFCPPQPITLAEYFPRRFLGDS------------
        SQEK   IE+++EGW +V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK+R+ K V E+ +DF    + +TLA++FP RFLGD             
Subjt:  SQEKYDSIEDENEGWILVVRRKKQKQSYARKESRLFRDNKRKVKSQRKKGKKKSRRSKPVMEEGEDFFCPPQPITLAEYFPRRFLGDS------------

Query:  --------------------------LGKALETVTCHIVDLVED--------------------------------------------------------
                                  LG  L     ++   V++                                                        
Subjt:  --------------------------LGKALETVTCHIVDLVED--------------------------------------------------------

Query:  --DDVPAISSRTVAVVEDVKASDLK-----------------KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------
          D  P + S  V +V       LK                 K E STS  K  +V  EK S  P+L+YVPLS  KKGESPF E P+ +K          
Subjt:  --DDVPAISSRTVAVVEDVKASDLK-----------------KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKA
                                                                           KKLL+EG+++P +RKGLGYK  EP+RITR+GK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKA

Query:  KVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEEST
        KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ E + +  Q T+S  + S F+RL+M    E+ +
Subjt:  KVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEEST

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]3.5e-3341.56Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------------------------------------------------
        K E ST+  K  ++  EK S  P+L+YVPLS  KKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSV
         KKLL+EG+ +P +RKGLGYKS EP+RITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  Q S 
Subjt:  -KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSV

Query:  FRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        F+RL++   +E+    T   T+PS FERL++
Subjt:  FRRLSMPIGKEESTFSTLNVTRPSTFERLNM

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.2e-3447.92Show/hide
Query:  KKGETSTSLVKPKVVKHEKCSP--VLQYVPLSWHKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDT
        +KGE STS  K  ++  EK S   +L+YVPLS  +KGESPF + P+ +K             KKLL+EG+ +P +RKG GYKS EP+ I R+ K KV D+
Subjt:  KKGETSTSLVKPKVVKHEKCSP--VLQYVPLSWHKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDT

Query:  NHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        NHITV EVD  +EKE   QR S F +IRP V R  VF+RLSV +T+ +  Q T+S  + S  +RL+M   KE+ T   L  TRPS FERL++
Subjt:  NHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.5e-3443.44Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++  EK S  P+L+YVPLS  KKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGK
        +P +RKGLGYKS EP+RITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E K +  Q T++  + S F+RL++   +
Subjt:  LPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGK

Query:  EESTFSTLNVTRPSTFERLNM
        E+    T   T+PS FERL++
Subjt:  EESTFSTLNVTRPSTFERLNM

A0A5D3BY54 Ty3-gypsy retrotransposon protein5.8e-3429.79Show/hide
Query:  SQEKYDSIEDENEGWILVVRRKKQKQSYARKESRLFRDNKRKVKSQRKKGKKKSRRSKPVMEEGEDFFCPPQPITLAEYFPRRFLGDS------------
        SQEK   IE+++EGW +V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK+R+ K V E+ +DF    + +TLA++FP RFLGD             
Subjt:  SQEKYDSIEDENEGWILVVRRKKQKQSYARKESRLFRDNKRKVKSQRKKGKKKSRRSKPVMEEGEDFFCPPQPITLAEYFPRRFLGDS------------

Query:  --------------------------LGKALETVTCHIVDLVED--------------------------------------------------------
                                  LG  L     ++   V++                                                        
Subjt:  --------------------------LGKALETVTCHIVDLVED--------------------------------------------------------

Query:  --DDVPAISSRTVAVVEDVKASDLK-----------------KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------
          D  P + S  V +V       LK                 K E STS  K  +V  EK S  P+L+YVPLS  KKGESPF E P+ +K          
Subjt:  --DDVPAISSRTVAVVEDVKASDLK-----------------KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKA
                                                                           KKLL+EG+++P +RKGLGYK  EP+RITR+GK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKA

Query:  KVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEEST
        KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ E + +  Q T+S  + S F+RL+M    E+ +
Subjt:  KVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEEST

A0A5D3C8N8 Ribonuclease H1.7e-3348.91Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEV
        K E STS  K  ++ +E  S  P+L+YVPLS  KKGESPF E P+ +K    ++LKE +++     T+KGLGYKS EP+RITR+GK KV D+NHITV+EV
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEV

Query:  DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        D  + KE   QRTS F RI P VARA VF+RLS+ E K +  Q T++  + S F+RL++   +E+        T+PS FERL++
Subjt:  DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNM

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.7e-3341.56Show/hide
Query:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------------------------------------------------
        K E ST+  K  ++  EK S  P+L+YVPLS  KKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVKHEKCS--PVLQYVPLSWHKKGESPFTECPKSIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSV
         KKLL+EG+ +P +RKGLGYKS EP+RITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  Q S 
Subjt:  -KKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSV

Query:  FRRLSMPIGKEESTFSTLNVTRPSTFERLNM
        F+RL++   +E+    T   T+PS FERL++
Subjt:  FRRLSMPIGKEESTFSTLNVTRPSTFERLNM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGATCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCTCG
CCTATTTCGAGACAATAAAAGAAAGGTTAAATCCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAGGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTCGGTGATAGTCTAGGAAAGGCACTTGAAACTGTCACGTGTCACATTGTGGACCTGGTGGAAGATGAT
GATGTCCCTGCTATCTCCTCGAGAACGGTGGCAGTTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAACCTAAAGTTGTAAA
ACATGAGAAGTGTTCACCTGTCCTACAATACGTCCCTTTATCTTGGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAGG
AAGGTTATAGTCTTCCTACAACGAGAAAAGGGCTTGGATATAAGTCGCAAGAACCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGCCAGACACAAATCATATAACA
GTAGAGGAGGTTGATGATTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAG
TGTCAATGAAACGAAAGAAGAGAGCACACAACCTACTAATAGCTCCACTCAACCTTCAGTGTTTCGAAGGTTAAGTATGCCCATTGGGAAAGAAGAGAGTACATTTTCAA
CTCTGAATGTCACTCGACCTTCAACTTTTGAAAGGTTAAATATGCCCATTGCGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGATCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCTCG
CCTATTTCGAGACAATAAAAGAAAGGTTAAATCCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAGGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTCGGTGATAGTCTAGGAAAGGCACTTGAAACTGTCACGTGTCACATTGTGGACCTGGTGGAAGATGAT
GATGTCCCTGCTATCTCCTCGAGAACGGTGGCAGTTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAACCTAAAGTTGTAAA
ACATGAGAAGTGTTCACCTGTCCTACAATACGTCCCTTTATCTTGGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAGG
AAGGTTATAGTCTTCCTACAACGAGAAAAGGGCTTGGATATAAGTCGCAAGAACCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGCCAGACACAAATCATATAACA
GTAGAGGAGGTTGATGATTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAG
TGTCAATGAAACGAAAGAAGAGAGCACACAACCTACTAATAGCTCCACTCAACCTTCAGTGTTTCGAAGGTTAAGTATGCCCATTGGGAAAGAAGAGAGTACATTTTCAA
CTCTGAATGTCACTCGACCTTCAACTTTTGAAAGGTTAAATATGCCCATTGCGAAATAA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIEDENEGWILVVRRKKQKQSYARKESRLFRDNKRKVKSQRKKGKKKSRRSKPVMEEGEDFFCPPQPITLAEYFPRRFLGDSLGKALETVTCHIVDLVEDD
DVPAISSRTVAVVEDVKASDLKKGETSTSLVKPKVVKHEKCSPVLQYVPLSWHKKGESPFTECPKSIKKKLLKEGYSLPTTRKGLGYKSQEPVRITRRGKAKVPDTNHIT
VEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETKEESTQPTNSSTQPSVFRRLSMPIGKEESTFSTLNVTRPSTFERLNMPIAK