; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037132 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037132
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:51653241..51660307
RNA-Seq ExpressionSpg037132
SyntenySpg037132
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055891.1 uncharacterized protein E6C27_scaffold438G00090 [Cucumis melo var. makuwa]1.1e-5236.31Show/hide
Query:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRR------------------------IKGSRKPKLVVE
        S+D+  +    D  +++ + V+N +EGWTLVTRR K+K+ F Q+E   +R YR K   ++QK                          ++     KLV++
Subjt:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRR------------------------IKGSRKPKLVVE

Query:  E-NQDFVLA----RHPITLTDFLPKNFLN--DD-------------HEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKESIEE
          NQ    A    R  I + D       +  D              HE+  GIVT      F+       + D+ S P   A           K E + E
Subjt:  E-NQDFVLA----RHPITLTDFLPKNFLN--DD-------------HEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKESIEE

Query:  VDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS--------GILKE--
        + + EV                           Q    ST   K +AP+ E         SN+P+L Y+  SR KKGESPF ECS         ILKE  
Subjt:  VDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS--------GILKE--

Query:  -------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRIT--
                K +  K+        LPERRT  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY   EPVRIT  
Subjt:  -------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRIT--

Query:  RKWKVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRL--
        RK KV +  HITVEE  D E+ KND SQ+ SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ +  K     P     +S F RL  
Subjt:  RKWKVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRL--

Query:  QATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG
          T GQ K  +  L  ++S  + ++      FPSRMKRK  V +NTEG
Subjt:  QATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-5536.14Show/hide
Query:  DVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDD
        D+ E  +  D  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +QK K++ K +RK KLV E+++DF   +  +TL DF P  FL D 
Subjt:  DVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDD

Query:  HEDIPGIVTCHA----------------------------------------------------------------------------------VNAFEE
         ++ PG+V   +                                                                                  +  F +
Subjt:  HEDIPGIVTCHA----------------------------------------------------------------------------------VNAFEE

Query:  GD-----------SSSSP------------------SQNAKKESIEEVDTREVQSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGI
        G            +  SP                     A +ES +   T      EAST  AKS    +E TSN PILRYVPLSRRKKGESPF E    
Subjt:  GD-----------SSSSP------------------SQNAKKESIEEVDTREVQSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGI

Query:  LK---------------------EAKTDRTKVTLPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYN
        LK                     E K D  + +LP+RRTK GFDP AYK + KAGY FTTHTEFKSLKI + + + S TQKKL +EG+AIP SR  LGY 
Subjt:  LK---------------------EAKTDRTKVTLPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYN

Query:  PPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVS
        PPEP+RITRK   KVVD++HITV+E+ D  ++K  DSQ+ S FDR+     R  V +RL    +E++    TS+  RRS FQRL+++
Subjt:  PPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVS

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]8.3e-5344.65Show/hide
Query:  DTREVQSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS------------------------GILKEAKTDRTKVTLPERR
        +T   Q    ST   K +AP+ E         SN P+LRY+PLSRRKKGESPF ECS                        G  K+ +    +  LPERR
Subjt:  DTREVQSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS------------------------GILKEAKTDRTKVTLPERR

Query:  TKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQ
        T  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY   EP+RIT K   KV +  HITVEE  D ++ K D SQ
Subjt:  TKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQ

Query:  KISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFFI
        + SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ +  K     P     +S F RL     + + K     +++S  +  +     
Subjt:  KISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFFI

Query:  TFPSRMKRKPFVLINTEG
         FPSRMKRK FV +NTEG
Subjt:  TFPSRMKRKPFVLINTEG

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-5230.91Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHA
        Q++   +E +DE WT+VTRRKK+K   +Q+E   +RNYRR N +QK K++ K +RK KL+ +E++DF   +  ITL DF P  FL D  ++ PG+V CHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHA

Query:  VNAFEEG---------------------------------------------------------------------------------------------
        +NA EE                                                                                              
Subjt:  VNAFEEG---------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------DSSSSPSQNA-----------KKESIEEVDTREV--------------
                                                            ++ S+P   A           K +S  EV + EV              
Subjt:  ----------------------------------------------------DSSSSPSQNA-----------KKESIEEVDTREV--------------

Query:  --------------QSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGILK---------------------EAKTDRTKVTLPERRT
                      +  EAST  AKS    +E TSN  ILRYVPLSRRKKGESPF E    LK                     E K D T+ +LP+RRT
Subjt:  --------------QSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGILK---------------------EAKTDRTKVTLPERRT

Query:  KAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQK
        K  FDP AYKL+ KAGY FTTHTEFKSLKI + + + S TQKKL +EG+AIP SR  LGY  PEP+RITRK   K+VD++HITV+E+ D   +K  DSQ+
Subjt:  KAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQK

Query:  ISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPPRSVFDRL-------------------QATYGQCKGKLKSLETD
         S FDRI     R  V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL                     +      ++K +  +
Subjt:  ISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPPRSVFDRL-------------------QATYGQCKGKLKSLETD

Query:  ESD------EMNDNNGFFITFPSRMKRKPFVLIN
                 E+          PSRMKRK FV +N
Subjt:  ESD------EMNDNNGFFITFPSRMKRKPFVLIN

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]1.3e-5334.79Show/hide
Query:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQK--------------------------------------
        S+D+  +    D  +++ + V+N +EGWTLVTRR K+K+ F Q+E   +R YR K   ++QK                                      
Subjt:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQK--------------------------------------

Query:  ------RRIKGSRKPKLVVEE---NQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKES
              +R  G+ + ++V+E+   +  F +     T    L + +++++     GIVT      F+       + D+ S P   A           K E 
Subjt:  ------RRIKGSRKPKLVVEE---NQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKES

Query:  IEEVDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTEC--------SGILK
        + E+ + EV                           Q    ST   K +AP+ E         SN+P+L Y+P SR KKGESPF EC        + ILK
Subjt:  IEEVDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTEC--------SGILK

Query:  E---------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRI
        E          K +  K+        LPERRT  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY+  EPVRI
Subjt:  E---------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRI

Query:  TRKWKVVDAH--HITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDR
        T K KV  A+  HITVEE  D E+ K D SQ+ SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ S  K     P     +S F R
Subjt:  TRKWKVVDAH--HITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDR

Query:  LQATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG
        L  +  + + K     +++S  +  +      FPSRMKRK FV +NTEG
Subjt:  LQATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG

TrEMBL top hitse value%identityAlignment
A0A5A7UQP2 Integrase catalytic domain-containing protein5.3e-5336.31Show/hide
Query:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRR------------------------IKGSRKPKLVVE
        S+D+  +    D  +++ + V+N +EGWTLVTRR K+K+ F Q+E   +R YR K   ++QK                          ++     KLV++
Subjt:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRR------------------------IKGSRKPKLVVE

Query:  E-NQDFVLA----RHPITLTDFLPKNFLN--DD-------------HEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKESIEE
          NQ    A    R  I + D       +  D              HE+  GIVT      F+       + D+ S P   A           K E + E
Subjt:  E-NQDFVLA----RHPITLTDFLPKNFLN--DD-------------HEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKESIEE

Query:  VDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS--------GILKE--
        + + EV                           Q    ST   K +AP+ E         SN+P+L Y+  SR KKGESPF ECS         ILKE  
Subjt:  VDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS--------GILKE--

Query:  -------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRIT--
                K +  K+        LPERRT  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY   EPVRIT  
Subjt:  -------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRIT--

Query:  RKWKVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRL--
        RK KV +  HITVEE  D E+ KND SQ+ SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ +  K     P     +S F RL  
Subjt:  RKWKVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRL--

Query:  QATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG
          T GQ K  +  L  ++S  + ++      FPSRMKRK  V +NTEG
Subjt:  QATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG

A0A5D3BTY1 Ribonuclease H4.0e-5344.65Show/hide
Query:  DTREVQSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS------------------------GILKEAKTDRTKVTLPERR
        +T   Q    ST   K +AP+ E         SN P+LRY+PLSRRKKGESPF ECS                        G  K+ +    +  LPERR
Subjt:  DTREVQSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTECS------------------------GILKEAKTDRTKVTLPERR

Query:  TKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQ
        T  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY   EP+RIT K   KV +  HITVEE  D ++ K D SQ
Subjt:  TKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQ

Query:  KISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFFI
        + SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ +  K     P     +S F RL     + + K     +++S  +  +     
Subjt:  KISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFFI

Query:  TFPSRMKRKPFVLINTEG
         FPSRMKRK FV +NTEG
Subjt:  TFPSRMKRKPFVLINTEG

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.5e-5536.14Show/hide
Query:  DVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDD
        D+ E  +  D  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +QK K++ K +RK KLV E+++DF   +  +TL DF P  FL D 
Subjt:  DVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDD

Query:  HEDIPGIVTCHA----------------------------------------------------------------------------------VNAFEE
         ++ PG+V   +                                                                                  +  F +
Subjt:  HEDIPGIVTCHA----------------------------------------------------------------------------------VNAFEE

Query:  GD-----------SSSSP------------------SQNAKKESIEEVDTREVQSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGI
        G            +  SP                     A +ES +   T      EAST  AKS    +E TSN PILRYVPLSRRKKGESPF E    
Subjt:  GD-----------SSSSP------------------SQNAKKESIEEVDTREVQSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGI

Query:  LK---------------------EAKTDRTKVTLPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYN
        LK                     E K D  + +LP+RRTK GFDP AYK + KAGY FTTHTEFKSLKI + + + S TQKKL +EG+AIP SR  LGY 
Subjt:  LK---------------------EAKTDRTKVTLPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYN

Query:  PPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVS
        PPEP+RITRK   KVVD++HITV+E+ D  ++K  DSQ+ S FDR+     R  V +RL    +E++    TS+  RRS FQRL+++
Subjt:  PPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVS

A0A5D3C0W6 Ty3-gypsy retrotransposon protein9.0e-5330.91Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHA
        Q++   +E +DE WT+VTRRKK+K   +Q+E   +RNYRR N +QK K++ K +RK KL+ +E++DF   +  ITL DF P  FL D  ++ PG+V CHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHA

Query:  VNAFEEG---------------------------------------------------------------------------------------------
        +NA EE                                                                                              
Subjt:  VNAFEEG---------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------DSSSSPSQNA-----------KKESIEEVDTREV--------------
                                                            ++ S+P   A           K +S  EV + EV              
Subjt:  ----------------------------------------------------DSSSSPSQNA-----------KKESIEEVDTREV--------------

Query:  --------------QSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGILK---------------------EAKTDRTKVTLPERRT
                      +  EAST  AKS    +E TSN  ILRYVPLSRRKKGESPF E    LK                     E K D T+ +LP+RRT
Subjt:  --------------QSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGILK---------------------EAKTDRTKVTLPERRT

Query:  KAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQK
        K  FDP AYKL+ KAGY FTTHTEFKSLKI + + + S TQKKL +EG+AIP SR  LGY  PEP+RITRK   K+VD++HITV+E+ D   +K  DSQ+
Subjt:  KAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKNDDSQK

Query:  ISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPPRSVFDRL-------------------QATYGQCKGKLKSLETD
         S FDRI     R  V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL                     +      ++K +  +
Subjt:  ISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPPRSVFDRL-------------------QATYGQCKGKLKSLETD

Query:  ESD------EMNDNNGFFITFPSRMKRKPFVLIN
                 E+          PSRMKRK FV +N
Subjt:  ESD------EMNDNNGFFITFPSRMKRKPFVLIN

A0A5D3C783 Ribonuclease H6.2e-5434.79Show/hide
Query:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQK--------------------------------------
        S+D+  +    D  +++ + V+N +EGWTLVTRR K+K+ F Q+E   +R YR K   ++QK                                      
Subjt:  SRDVAESKSARDVCQDQLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQK--------------------------------------

Query:  ------RRIKGSRKPKLVVEE---NQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKES
              +R  G+ + ++V+E+   +  F +     T    L + +++++     GIVT      F+       + D+ S P   A           K E 
Subjt:  ------RRIKGSRKPKLVVEE---NQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHAVNAFE-------EGDSSSSPSQNA-----------KKES

Query:  IEEVDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTEC--------SGILK
        + E+ + EV                           Q    ST   K +AP+ E         SN+P+L Y+P SR KKGESPF EC        + ILK
Subjt:  IEEVDTREV---------------------------QSREASTHPAKSKAPKEE-------ATSNVPILRYVPLSRRKKGESPFTEC--------SGILK

Query:  E---------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRI
        E          K +  K+        LPERRT  GFDP AYKL+ KAGY FTT TE KS+KIFD R E SPTQKKLQK+GY+IP+SRA +GY+  EPVRI
Subjt:  E---------AKTDRTKVT-------LPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKSLKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRI

Query:  TRKWKVVDAH--HITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDR
        T K KV  A+  HITVEE  D E+ K D SQ+ SVFDRI     R SV QR+  S ++   Q  T + TR S FQRL+ S  K     P     +S F R
Subjt:  TRKWKVVDAH--HITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRRSMFQRLSVSTSKKVDEPP-----RSVFDR

Query:  LQATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG
        L  +  + + K     +++S  +  +      FPSRMKRK FV +NTEG
Subjt:  LQATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.7e-0425.71Show/hide
Query:  PSFGWDVDKL----LRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSSGVAQTSSSDNLQSRWWNRLWKVKLPSKIKLFIWKAYND
        P  GWD  K+      + + E   ++  +   A    DR  W ++  G+ SV+S Y++     V + +      + ++N LWKV++P ++K F+W   N 
Subjt:  PSFGWDVDKL----LRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSSGVAQTSSSDNLQSRWWNRLWKVKLPSKIKLFIWKAYND

Query:  CLPTK
         + T+
Subjt:  CLPTK

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein3.1e-0528.43Show/hide
Query:  WDVDKLLRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSS------GVAQTSSSDNLQSRWWNRLWKVKLPSKIKLFIWKAYNDCL
        WD  K+ + V   D   I  I ++   + D+ IW+Y + GE +V+SGY +           +     S +L++R WN    + +  K+K F+W+A +  L
Subjt:  WDVDKLLRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSS------GVAQTSSSDNLQSRWWNRLWKVKLPSKIKLFIWKAYNDCL

Query:  PT
         T
Subjt:  PT

AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0429.06Show/hide
Query:  VKVSEYITPS-FGWDVDKLLRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSSGVAQTSSSDNLQSRWWN----RLWKVKLPSKIK
        +KVS+ I  S   W  D +       + K+I  +        D + W YTS G+ +VKSGY + L+  + + SS   +     N    ++WK +   KI+
Subjt:  VKVSEYITPS-FGWDVDKLLRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSSGVAQTSSSDNLQSRWWN----RLWKVKLPSKIK

Query:  LFIWKAYNDCLPTKWCL
         F+WK  ++ LP    L
Subjt:  LFIWKAYNDCLPTKWCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTTGGAGGGAGGTCAAAGTTTCAGAATATATTACACCATCTTTTGGGTGGGATGTGGACAAACTTCTTAGGTCGGTTCAGGCTGAAGATGTAAAAATCATTAC
CACTATTCCTATTAGCGCTCATGATGAGGAGGACAGATGGATATGGCATTACACTTCACATGGAGAAGACTCTGTCAAAAGTGGGTATAAAATTGCCCTTTCTTCAGGTG
TAGCCCAAACATCTTCCAGTGACAATTTACAAAGTAGGTGGTGGAATAGGCTTTGGAAGGTGAAGTTACCATCCAAAATCAAGCTTTTCATTTGGAAGGCTTACAATGAT
TGTCTGCCAACGAAGTGGTGTTTGATGAAACATGATGCTGAGAGCATGACAGAATCTGCTCAACTTGAAATCACCGCTGCAGAAAATGTGATGCTTGGCAAATTCATCTC
TTCTTCTCAGCAACCAAACGAAGCATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTAGAACTAGTGAAGAACGAATGACTGAGGTTGAGAAGAAAATCAACA
TGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAATCTGCAAGAGACGTCTGCCAAGAC
CAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCTTCACATGTTCCGAAACTACAG
AAGAAAGAACATGTCGCAAAAGCAGAAGAGAAGGATAAAAGGCTCGAGAAAGCCTAAATTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGGCTCGACATCCGATAACCC
TTACAGATTTCCTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGGGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAGGGTGATTCTTCCTCAAGC
CCATCTCAAAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATACTCGTGAAGTTCAATCAAGGGAAGCATCCACTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGC
AACGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAAGGAAGCAAAGACAGATCGTA
CCAAAGTGACTTTGCCGGAAAGACGAACGAAAGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGGCTTTACAACTCATACTGAGTTTAAAAGT
CTAAAAATCTTCGATGGGAGATCTGAGCCTTCTCCGACACAGAAGAAGCTCCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGAACTAGGGTACAATCCCCCAGA
GCCAGTTCGTATAACTAGAAAATGGAAAGTTGTAGATGCACATCACATAACGGTAGAAGAGATGGGCGATCCAGAAGATAAAAAGAATGATGATAGCCAAAAAATCTCTG
TCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGTCAGAGCAAAACTTCTACTCCTACCCGACGT
TCAATGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCGCCGAGATCCGTGTTTGATCGCCTTCAAGCAACCTATGGCCAATGCAAGGGAAAGTTGAA
AAGTCTTGAAACAGATGAATCCGACGAGATGAATGACAACAACGGATTTTTCATTACTTTTCCTTCACGGATGAAGAGAAAACCTTTTGTTCTCATAAATACAGAAGGAC
TACGTTCCCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGAACAGGCCACTCTCACCCGTACAAATCAAAGGACAATCGCTCATGGACATG
AGTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTTGGAGGGAGGTCAAAGTTTCAGAATATATTACACCATCTTTTGGGTGGGATGTGGACAAACTTCTTAGGTCGGTTCAGGCTGAAGATGTAAAAATCATTAC
CACTATTCCTATTAGCGCTCATGATGAGGAGGACAGATGGATATGGCATTACACTTCACATGGAGAAGACTCTGTCAAAAGTGGGTATAAAATTGCCCTTTCTTCAGGTG
TAGCCCAAACATCTTCCAGTGACAATTTACAAAGTAGGTGGTGGAATAGGCTTTGGAAGGTGAAGTTACCATCCAAAATCAAGCTTTTCATTTGGAAGGCTTACAATGAT
TGTCTGCCAACGAAGTGGTGTTTGATGAAACATGATGCTGAGAGCATGACAGAATCTGCTCAACTTGAAATCACCGCTGCAGAAAATGTGATGCTTGGCAAATTCATCTC
TTCTTCTCAGCAACCAAACGAAGCATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTAGAACTAGTGAAGAACGAATGACTGAGGTTGAGAAGAAAATCAACA
TGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAATCTGCAAGAGACGTCTGCCAAGAC
CAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCTTCACATGTTCCGAAACTACAG
AAGAAAGAACATGTCGCAAAAGCAGAAGAGAAGGATAAAAGGCTCGAGAAAGCCTAAATTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGGCTCGACATCCGATAACCC
TTACAGATTTCCTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGGGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAGGGTGATTCTTCCTCAAGC
CCATCTCAAAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATACTCGTGAAGTTCAATCAAGGGAAGCATCCACTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGC
AACGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAAGGAAGCAAAGACAGATCGTA
CCAAAGTGACTTTGCCGGAAAGACGAACGAAAGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGGCTTTACAACTCATACTGAGTTTAAAAGT
CTAAAAATCTTCGATGGGAGATCTGAGCCTTCTCCGACACAGAAGAAGCTCCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGAACTAGGGTACAATCCCCCAGA
GCCAGTTCGTATAACTAGAAAATGGAAAGTTGTAGATGCACATCACATAACGGTAGAAGAGATGGGCGATCCAGAAGATAAAAAGAATGATGATAGCCAAAAAATCTCTG
TCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGTCAGAGCAAAACTTCTACTCCTACCCGACGT
TCAATGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCGCCGAGATCCGTGTTTGATCGCCTTCAAGCAACCTATGGCCAATGCAAGGGAAAGTTGAA
AAGTCTTGAAACAGATGAATCCGACGAGATGAATGACAACAACGGATTTTTCATTACTTTTCCTTCACGGATGAAGAGAAAACCTTTTGTTCTCATAAATACAGAAGGAC
TACGTTCCCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGAACAGGCCACTCTCACCCGTACAAATCAAAGGACAATCGCTCATGGACATG
AGTCCATAA
Protein sequenceShow/hide protein sequence
MASWREVKVSEYITPSFGWDVDKLLRSVQAEDVKIITTIPISAHDEEDRWIWHYTSHGEDSVKSGYKIALSSGVAQTSSSDNLQSRWWNRLWKVKLPSKIKLFIWKAYND
CLPTKWCLMKHDAESMTESAQLEITAAENVMLGKFISSSQQPNEASSPDVMSVMMTDARTSEERMTEVEKKINMLLKMVEEKDQEIASLRNQMESRDVAESKSARDVCQD
QLESVENEDEGWTLVTRRKKQKKHFVQRELHMFRNYRRKNMSQKQKRRIKGSRKPKLVVEENQDFVLARHPITLTDFLPKNFLNDDHEDIPGIVTCHAVNAFEEGDSSSS
PSQNAKKESIEEVDTREVQSREASTHPAKSKAPKEEATSNVPILRYVPLSRRKKGESPFTECSGILKEAKTDRTKVTLPERRTKAGFDPNAYKLLEKAGYGFTTHTEFKS
LKIFDGRSEPSPTQKKLQKEGYAIPSSRAELGYNPPEPVRITRKWKVVDAHHITVEEMGDPEDKKNDDSQKISVFDRIKAPTTRLSVHQRLKYSSSEKEGQSKTSTPTRR
SMFQRLSVSTSKKVDEPPRSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFFITFPSRMKRKPFVLINTEGLRSQLPTRSRPQNGRLIESANRPLSPVQIKGQSLMDM
SP