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Spg037136 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037136
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:52251532..52253490
RNA-Seq ExpressionSpg037136
SyntenySpg037136
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1456.84Show/hide
Query:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Subjt:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1366.67Show/hide
Query:  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE
        +I   TLS LRDN+ VVS  R     DDGSAGR P+HRRTSKRWLYW CPTQR  VMLV+
Subjt:  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.6e-2658.39Show/hide
Query:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR
        LVFSD LSIL                 RSSL  +G++    RF        STLS LRDNDAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT R
Subjt:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR

Query:  RSVML----------VEIELPVPDTLPTSAESSRTNS
        RSVML          VEIEL VPDTLPTSAESS +NS
Subjt:  RSVML----------VEIELPVPDTLPTSAESSRTNS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.6e-2658.39Show/hide
Query:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR
        LVFSD LSIL                 RSSL  +G++    RF        STLS LRDNDAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT R
Subjt:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR

Query:  RSVML----------VEIELPVPDTLPTSAESSRTNS
        RSVML          VEIEL VPDTLPTSAESS +NS
Subjt:  RSVML----------VEIELPVPDTLPTSAESSRTNS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1456.84Show/hide
Query:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Subjt:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.3e-1456.84Show/hide
Query:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Subjt:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

A0A5A7TCY8 DNA/RNA polymerases superfamily protein2.1e-1366.67Show/hide
Query:  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE
        +I   TLS LRDN+ VVS  R     DDGSAGR P+HRRTSKRWLYW CPTQR  VMLV+
Subjt:  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein1.3e-2658.39Show/hide
Query:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR
        LVFSD LSIL                 RSSL  +G++    RF        STLS LRDNDAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT R
Subjt:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR

Query:  RSVML----------VEIELPVPDTLPTSAESSRTNS
        RSVML          VEIEL VPDTLPTSAESS +NS
Subjt:  RSVML----------VEIELPVPDTLPTSAESSRTNS

A0A5D3BG85 Uncharacterized protein1.3e-2658.39Show/hide
Query:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR
        LVFSD LSIL                 RSSL  +G++    RF        STLS LRDNDAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT R
Subjt:  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQR

Query:  RSVML----------VEIELPVPDTLPTSAESSRTNS
        RSVML          VEIEL VPDTLPTSAESS +NS
Subjt:  RSVML----------VEIELPVPDTLPTSAESSRTNS

A0A5D3BTP3 Reverse transcriptase3.3e-1456.84Show/hide
Query:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI
        P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  LVEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Subjt:  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggaaaatagagcacaggattttcgAGCAAACCAGAGGATCCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCGAATCAGAAGCTCTTTGGGCAATTC
TGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGGTTTATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACT
ACGACATAGACGATGGAAGTGCTGGGCGGGCCCCAATACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAG
ATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAACTCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTG
CAAGGATTGGATAATATCGTCCTAG
mRNA sequenceShow/hide mRNA sequence
atggaaaatagagcacaggattttcgAGCAAACCAGAGGATCCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCGAATCAGAAGCTCTTTGGGCAATTC
TGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGGTTTATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACT
ACGACATAGACGATGGAAGTGCTGGGCGGGCCCCAATACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAG
ATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAACTCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTG
CAAGGATTGGATAATATCGTCCTAG
Protein sequenceShow/hide protein sequence
MENRAQDFRANQRILVFSDVLSILGCTSRIRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE
IELPVPDTLPTSAESSRTNSSTWVELYIESVHIVNVCKDWIISS