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Spg037141 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037141
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:50358918..50362535
RNA-Seq ExpressionSpg037141
SyntenySpg037141
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.1e-1859.57Show/hide
Query:  VGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
        V +   E ++ PRGNR SLQTGELDKT                 VEIELPV DTLP S ESSGS+ RS GIVR DDVCWLH VFR K AGG GG
Subjt:  VGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-1951.15Show/hide
Query:  VLVGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGS----------------------------------
        VL GLGY EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTS ESSGS                                  
Subjt:  VLVGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGS----------------------------------

Query:  -SFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
         S  ST IVRGD+VCWLHAVF AK AGG GG
Subjt:  -SFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.2e-1844.08Show/hide
Query:  KAHAKPAIAESVFNLSTSGVLVGLGYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSVESSGSSFR-------
        K +AKPAIAES  N     VL GL Y E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTS ESS S+         
Subjt:  KAHAKPAIAESVFNLSTSGVLVGLGYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSVESSGSSFR-------

Query:  -------------------------STGIVRGDDVCWLHAVFRAKLAGGSGG
                                 S GIVRGDD+CWLHAVF AK AG  GG
Subjt:  -------------------------STGIVRGDDVCWLHAVFRAKLAGGSGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.0e-2069.05Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
        RPRGNR SLQTG+LDKT                 VEIELPVPDTLPTS ES  S+ RSTGIVRGDDVCWLHAVFRAK AGG GG
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]5.2e-1763.41Show/hide
Query:  EGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKL
        E ++ PRGNRSSLQTG+LDKT                 VEIELPVPDT PTS ESS S+  S GIVRGDDVCWLHAVFRAK+
Subjt:  EGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKL

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.3e-2051.15Show/hide
Query:  VLVGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGS----------------------------------
        VL GLGY EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTS ESSGS                                  
Subjt:  VLVGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGS----------------------------------

Query:  -SFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
         S  ST IVRGD+VCWLHAVF AK AGG GG
Subjt:  -SFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

A0A5A7UAH6 CCHC-type domain-containing protein3.0e-1844.08Show/hide
Query:  KAHAKPAIAESVFNLSTSGVLVGLGYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSVESSGSSFR-------
        K +AKPAIAES  N     VL GL Y E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTS ESS S+         
Subjt:  KAHAKPAIAESVFNLSTSGVLVGLGYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSVESSGSSFR-------

Query:  -------------------------STGIVRGDDVCWLHAVFRAKLAGGSGG
                                 S GIVRGDD+CWLHAVF AK AG  GG
Subjt:  -------------------------STGIVRGDDVCWLHAVFRAKLAGGSGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.4e-2069.05Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
        RPRGNR SLQTG+LDKT                 VEIELPVPDTLPTS ES  S+ RSTGIVRGDDVCWLHAVFRAK AGG GG
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

A0A5D3BQ75 Uncharacterized protein2.5e-1763.41Show/hide
Query:  EGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKL
        E ++ PRGNRSSLQTG+LDKT                 VEIELPVPDT PTS ESS S+  S GIVRGDDVCWLHAVFRAK+
Subjt:  EGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKL

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.0e-1859.57Show/hide
Query:  VGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG
        V +   E ++ PRGNR SLQTGELDKT                 VEIELPV DTLP S ESSGS+ RS GIVR DDVCWLH VFR K AGG GG
Subjt:  VGLGYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGTGCTTTGCTGCAGCACAGTATTTGCC
CCCTCAAGTCGCTCAGCAACAGATTCTGCACAAAATGATTTCCAAAGCTTCCATTCTTCCAAATGGATTAAAACATGTAAAAGCTCATGCAAAGCCAGCCATTGCAGAAT
CTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGGGCTACACAGAAGGAATAAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAG
ACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCGGATCAAGCTTCAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCT
TCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTTCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGTGCTTTGCTGCAGCACAGTATTTGCC
CCCTCAAGTCGCTCAGCAACAGATTCTGCACAAAATGATTTCCAAAGCTTCCATTCTTCCAAATGGATTAAAACATGTAAAAGCTCATGCAAAGCCAGCCATTGCAGAAT
CTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGGGCTACACAGAAGGAATAAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAG
ACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCGGATCAAGCTTCAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCT
TCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTTCGGGAGGG
Protein sequenceShow/hide protein sequence
MKYDRSSTRQLAIPSSVTGVHQYTMIVVCFAAAQYLPPQVAQQQILHKMISKASILPNGLKHVKAHAKPAIAESVFNLSTSGVLVGLGYTEGIKRPRGNRSSLQTGELDK
TVEIELPVPDTLPTSVESSGSSFRSTGIVRGDDVCWLHAVFRAKLAGGSGG