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Spg037157 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037157
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:51443001..51451210
RNA-Seq ExpressionSpg037157
SyntenySpg037157
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-0548.61Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVASERLEFRNP
        K N+L +     +EE+D +I  LK+ IE++  AESS T  IKN NKGK I+Q+ QPQ S S+AS  +E  NP
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVASERLEFRNP
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]5.5e-0451.56Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EE+D +I  LK+ IE++  AESS T  IKN NKGK I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-0453.12Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EEKD +I  LK+ IE++  AESS T  IKN NKGK I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-0451.56Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EE+D +I  LK+ IE++  AESS T +IKN NKGK I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
KAA0065417.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0441.05Show/hide
Query:  NELRLQEDKASTIASEETTLQGACTNDKFLVKYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        NE  LQ +  S + ++  T +      +   K N+L +    A+EE+D +I  LK+ IE++  AESS T +IKN NKGK I+Q+ QPQ S S+AS
Subjt:  NELRLQEDKASTIASEETTLQGACTNDKFLVKYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein3.1e-0548.61Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVASERLEFRNP
        K N+L +     +EE+D +I  LK+ IE++  AESS T  IKN NKGK I+Q+ QPQ S S+AS  +E  NP
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVASERLEFRNP
A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.2e-0453.12Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EEKD +I  LK+ IE++  AESS T  IKN NKGK I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
A0A5A7UU70 Ty3-gypsy retrotransposon protein1.5e-0451.56Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EE+D +I  LK+ IE++  AESS T +IKN NKGK I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
A0A5A7VEA7 Ty3-gypsy retrotransposon protein5.3e-0541.05Show/hide
Query:  NELRLQEDKASTIASEETTLQGACTNDKFLVKYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        NE  LQ +  S + ++  T +      +   K N+L +    A+EE+D +I  LK+ IE++  AESS T +IKN NKGK I+Q+ QPQ S S+AS
Subjt:  NELRLQEDKASTIASEETTLQGACTNDKFLVKYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class2.6e-0450Show/hide
Query:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
        K N+L +    A+EE+D +I  LK+ I+++  AESS T+ IKN NKGK+I+Q+ QPQ S S+AS
Subjt:  KYNLLFEPDYDAIEEKDSQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCTCGACCCGACCGTGCGTACACTGGATCGGGGAGCAGGGCATTGGCCCGACCGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCTACCT
TGTATTCGATACAGATGCAATAATCCAAAGCATCCATGAGGGATTGTCCTTAGATTTGTATGGATGTGAGTGGCCAGTTCGCCGACTCAATAATCCTACCCTTTCAGGGG
CAAGACCAAATAGGGGTTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCTTATTGGGCGGCAAAAGGTCACAGCGTCGCGACGCTGTGACCACAACGTCGCGA
CACTCTCTATTGTCTCCTTTGCAGAATGGCGGTATCGCGACAGCCAAGTGGAGAGGAGCGGGATTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGGATATTGGGTT
CATTGCATGTGAGAGGATTATGTATGCTCGAGAGAGGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTA
CCATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAATGACAAGTTTCTTGTTAAGTATAACCTTTTGTTTGAACCTGATTATGATGCGATTGAAGAAAAAGAT
TCTCAAATTGAGCACCTAAAGAGTCAGATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCACAACAAAGGGAAGATTATAGTGCAAGACGA
TCAACCACAATGTTCTGCTTCAGTCGCTTCTGAAAGATTGGAATTCCGTAATCCCGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTAT
CGAATACAAGGTGGGTCGTATCACATAATGTCACCAGGATAAGGGCATACAACCCAACAGTGTATACACGGGATCGGCAGATGAGGGCTCGGCCCGATCGTGTGTACACT
GGATCGGGGGAGCAAGGCATTGGCCCGATCGTGCTGCGACACTGGATCGGGGAAGCAAGACATCGCCCCGATCGTGCATACACTGGATCGGGGGAGCAAGGCATCGCCCC
GACCATGCATTCATTAGATCGGGGGATGAGGGCTCGACCCGACCGTGCGTACACTGGATCGGGGGATCAAGGCATCGCCCCGATCGTGCATACACTGGATCGGGGGAGTA
AGGCATCGCCCCAACCACTGGATCGGGGGAACAAGGCATCGCCCCAACCGTACGTACACTGGATCGGGGGAGCAAGGCATCGCCTTGACCATGAGTACACTGTATCGGGG
GATGAGGGCTCGACCCGGCCGTGCGTACATTGGATCGGGGGAGCAAGGCATCGCCCCGACCGTGCGTACACTGGATTAGGTGATGTGGGCTCGGACCAACCGTGTGTACA
CTGGAGCAAGGCATCGTCCCGACCGTGCATCGGGGGAGCAAGGCATCGCCTCGACCGTGCGTACACTGGATCGGGGGAGCAAGGCATCTCCCCGAACGTGCGTGCACGGG
ATTGGGTGATGTGGGCTCGGCCCGACTGTGTGTACACTGGATCGAGGGAGCAAGGCATCGCCCCGACCATGCGTACACTGGATTGGGTGATGTGGGCTCGACCCGACCGT
GTGTACATTGGATCGGGGGAGCAAGGCATCGGCCCGATCGTGCGTACACTGGATCGGGGGATGAAGGCTCGACCCGACCGTGCGTACACTGGATCGGGGGACAAGGCATC
ACCCCGACCGTGCGTACACTGGATCGGGGGAGCAAGGCATCGCCCCGACCGTGCGTACACTAGATCGAGGGATGAGGGCTCGACCCGATCGTGCGAACATTGGATCAGGC
CTGGAATAGGGGTAGCGTCGCGACGCTACCTTGCTCAGCGTCGCGACGCTGCTGCGCACGCGGCTTGGGCAACCCGAAAGGGTAGCGTCGCGACGCTGTCTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCTCGACCCGACCGTGCGTACACTGGATCGGGGAGCAGGGCATTGGCCCGACCGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCTACCT
TGTATTCGATACAGATGCAATAATCCAAAGCATCCATGAGGGATTGTCCTTAGATTTGTATGGATGTGAGTGGCCAGTTCGCCGACTCAATAATCCTACCCTTTCAGGGG
CAAGACCAAATAGGGGTTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCTTATTGGGCGGCAAAAGGTCACAGCGTCGCGACGCTGTGACCACAACGTCGCGA
CACTCTCTATTGTCTCCTTTGCAGAATGGCGGTATCGCGACAGCCAAGTGGAGAGGAGCGGGATTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGGATATTGGGTT
CATTGCATGTGAGAGGATTATGTATGCTCGAGAGAGGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTA
CCATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAATGACAAGTTTCTTGTTAAGTATAACCTTTTGTTTGAACCTGATTATGATGCGATTGAAGAAAAAGAT
TCTCAAATTGAGCACCTAAAGAGTCAGATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCACAACAAAGGGAAGATTATAGTGCAAGACGA
TCAACCACAATGTTCTGCTTCAGTCGCTTCTGAAAGATTGGAATTCCGTAATCCCGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTAT
CGAATACAAGGTGGGTCGTATCACATAATGTCACCAGGATAAGGGCATACAACCCAACAGTGTATACACGGGATCGGCAGATGAGGGCTCGGCCCGATCGTGTGTACACT
GGATCGGGGGAGCAAGGCATTGGCCCGATCGTGCTGCGACACTGGATCGGGGAAGCAAGACATCGCCCCGATCGTGCATACACTGGATCGGGGGAGCAAGGCATCGCCCC
GACCATGCATTCATTAGATCGGGGGATGAGGGCTCGACCCGACCGTGCGTACACTGGATCGGGGGATCAAGGCATCGCCCCGATCGTGCATACACTGGATCGGGGGAGTA
AGGCATCGCCCCAACCACTGGATCGGGGGAACAAGGCATCGCCCCAACCGTACGTACACTGGATCGGGGGAGCAAGGCATCGCCTTGACCATGAGTACACTGTATCGGGG
GATGAGGGCTCGACCCGGCCGTGCGTACATTGGATCGGGGGAGCAAGGCATCGCCCCGACCGTGCGTACACTGGATTAGGTGATGTGGGCTCGGACCAACCGTGTGTACA
CTGGAGCAAGGCATCGTCCCGACCGTGCATCGGGGGAGCAAGGCATCGCCTCGACCGTGCGTACACTGGATCGGGGGAGCAAGGCATCTCCCCGAACGTGCGTGCACGGG
ATTGGGTGATGTGGGCTCGGCCCGACTGTGTGTACACTGGATCGAGGGAGCAAGGCATCGCCCCGACCATGCGTACACTGGATTGGGTGATGTGGGCTCGACCCGACCGT
GTGTACATTGGATCGGGGGAGCAAGGCATCGGCCCGATCGTGCGTACACTGGATCGGGGGATGAAGGCTCGACCCGACCGTGCGTACACTGGATCGGGGGACAAGGCATC
ACCCCGACCGTGCGTACACTGGATCGGGGGAGCAAGGCATCGCCCCGACCGTGCGTACACTAGATCGAGGGATGAGGGCTCGACCCGATCGTGCGAACATTGGATCAGGC
CTGGAATAGGGGTAGCGTCGCGACGCTACCTTGCTCAGCGTCGCGACGCTGCTGCGCACGCGGCTTGGGCAACCCGAAAGGGTAGCGTCGCGACGCTGTCTACATAG
Protein sequenceShow/hide protein sequence
MRARPDRAYTGSGSRALARPDKAGYLILVTLCDTTYLVFDTDAIIQSIHEGLSLDLYGCEWPVRRLNNPTLSGARPNRGWEHNSTRWNSLLPLLGGKRSQRRDAVTTTSR
HSLLSPLQNGGIATAKWRGAGFKALFVEIVTGTDIGFIACERIMYARERNKSYMGSTAHCCFNELRLQEDKASTIASEETTLQGACTNDKFLVKYNLLFEPDYDAIEEKD
SQIEHLKSQIENQHIAESSQTQVIKNHNKGKIIVQDDQPQCSASVASERLEFRNPDTPTRMSPTWMLWIIASVSNTRWVVSHNVTRIRAYNPTVYTRDRQMRARPDRVYT
GSGEQGIGPIVLRHWIGEARHRPDRAYTGSGEQGIAPTMHSLDRGMRARPDRAYTGSGDQGIAPIVHTLDRGSKASPQPLDRGNKASPQPYVHWIGGARHRLDHEYTVSG
DEGSTRPCVHWIGGARHRPDRAYTGLGDVGSDQPCVHWSKASSRPCIGGARHRLDRAYTGSGEQGISPNVRARDWVMWARPDCVYTGSREQGIAPTMRTLDWVMWARPDR
VYIGSGEQGIGPIVRTLDRGMKARPDRAYTGSGDKASPRPCVHWIGGARHRPDRAYTRSRDEGSTRSCEHWIRPGIGVASRRYLAQRRDAAAHAAWATRKGSVATLST