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Spg037159 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037159
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:51940930..51944828
RNA-Seq ExpressionSpg037159
SyntenySpg037159
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.7e-2475.95Show/hide
Query:  EIDRCYI-PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQ
        E+D+  I  LLTL+VL D+DA+VEIELPV DTLPMS+ESS S+SRS G+VR DDVCWLHVVFR K AGGPGGGVTTWYQ
Subjt:  EIDRCYI-PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQ

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.5e-2181.82Show/hide
Query:  LLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVT
        L TLSVL D+DAVVEIELPVPDTLP S+ES  S+SRSTG+VRGDDVCWLH VFR K AGGPGGGVT
Subjt:  LLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVT

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.1e-2276.81Show/hide
Query:  PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTW
        PL TLSVL D+DAV EIELPVPDTL  S+ESS S+SRS G+VRGDDVCWLH +FR K+ GGPGGGVTTW
Subjt:  PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTW

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-2057.58Show/hide
Query:  CDIGSMTVAEYEHKYLELSKYATNVMRDEIDRCYIPLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGG
        CD   +++A Y  + L L  Y          +    L TLSVLHD+DAVVEIEL VPDTLP S+ES RS+SRS G+VRGDDVCWLH +FR K AGGPGG
Subjt:  CDIGSMTVAEYEHKYLELSKYATNVMRDEIDRCYIPLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]4.8e-2381.16Show/hide
Query:  TLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQS
        TLSVLHD+DAVVEIELPV DTLP S+ESS S+SRS G+VR DDVCWLH VFR K A GPGGGVTTWYQS
Subjt:  TLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5D3BAD1 Retrotrans_gag domain-containing protein1.7e-2181.82Show/hide
Query:  LLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVT
        L TLSVL D+DAVVEIELPVPDTLP S+ES  S+SRSTG+VRGDDVCWLH VFR K AGGPGGGVT
Subjt:  LLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVT

A0A5D3BNX1 Zf-CCHC domain-containing protein2.0e-2276.81Show/hide
Query:  PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTW
        PL TLSVL D+DAV EIELPVPDTL  S+ESS S+SRS G+VRGDDVCWLH +FR K+ GGPGGGVTTW
Subjt:  PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTW

A0A5D3BP54 Gag/pol protein4.1e-2057.58Show/hide
Query:  CDIGSMTVAEYEHKYLELSKYATNVMRDEIDRCYIPLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGG
        CD   +++A Y  + L L  Y          +    L TLSVLHD+DAVVEIEL VPDTLP S+ES RS+SRS G+VRGDDVCWLH +FR K AGGPGG
Subjt:  CDIGSMTVAEYEHKYLELSKYATNVMRDEIDRCYIPLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGG

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.7e-2475.95Show/hide
Query:  EIDRCYI-PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQ
        E+D+  I  LLTL+VL D+DA+VEIELPV DTLPMS+ESS S+SRS G+VR DDVCWLHVVFR K AGGPGGGVTTWYQ
Subjt:  EIDRCYI-PLLTLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQ

A0A5D3CU23 Retrotrans_gag domain-containing protein2.3e-2381.16Show/hide
Query:  TLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQS
        TLSVLHD+DAVVEIELPV DTLP S+ESS S+SRS G+VR DDVCWLH VFR K A GPGGGVTTWYQS
Subjt:  TLSVLHDHDAVVEIELPVPDTLPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGTCCGGTCTTATGCAAAGTCATTGCATAGGATACCCCCACCTGCATGTCTCCT
ACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTTGTGATATAGGATCGATGACAGTGGCTGAGTATGAGCATAAATATCTTGAGTTGTCCAAGTACGCTA
CAAATGTAATGAGGGATGAGATTGATAGATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACCACGATGCTGTTGTAGAGATCGAGCTCCCTGTGCCTGATACA
CTGCCGATGTCTTCTGAAAGTTCTAGATCAAGCTCCAGGTCAACAGGGGTCGTTAGAGGAGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGACCAAGCTAGCAGGTGG
TCCGGGAGGAGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGTCCGGTCTTATGCAAAGTCATTGCATAGGATACCCCCACCTGCATGTCTCCT
ACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTTGTGATATAGGATCGATGACAGTGGCTGAGTATGAGCATAAATATCTTGAGTTGTCCAAGTACGCTA
CAAATGTAATGAGGGATGAGATTGATAGATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACCACGATGCTGTTGTAGAGATCGAGCTCCCTGTGCCTGATACA
CTGCCGATGTCTTCTGAAAGTTCTAGATCAAGCTCCAGGTCAACAGGGGTCGTTAGAGGAGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGACCAAGCTAGCAGGTGG
TCCGGGAGGAGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MTLRLLEAGDWWESRGSLEVRSYAKSLHRIPPPACLLHGCFGSLHLYRIQGCDIGSMTVAEYEHKYLELSKYATNVMRDEIDRCYIPLLTLSVLHDHDAVVEIELPVPDT
LPMSSESSRSSSRSTGVVRGDDVCWLHVVFRTKLAGGPGGGVTTWYQSS