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Spg037161 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037161
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:50442823..50444509
RNA-Seq ExpressionSpg037161
SyntenySpg037161
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-1452.58Show/hide
Query:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF
        RA+    WPRGNR  LQT EL KT                 VEIEL +PDTLPTSAESS S+SST +ELY ES+H+E  G   ++  DDV WLHA+F
Subjt:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.4e-1453.41Show/hide
Query:  PRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVRWLHAIF
        PRGNR  L T +L KTVEIEL VPDTLPTSAESS+S+SSTW+ELY ES+H+                  EG   ++  DD+ WLHA+F
Subjt:  PRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVRWLHAIF

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.2e-1358.11Show/hide
Query:  EKLMVFGMENRAQDFRAKQEDLWPRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI
        E   +FGM  +   +     ++WPRGNR   QT +L KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES+H+
Subjt:  EKLMVFGMENRAQDFRAKQEDLWPRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-1452.58Show/hide
Query:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF
        RA+    WPRGNR  LQT EL KT                 VEIEL +PDTLPTSAESS S+SST +ELY ES+H+E  G   ++  DDV WLHA+F
Subjt:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-1348.11Show/hide
Query:  WPRGNRSGLQTRELAK-----------------TVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVR
        WPRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES+H+                  EG   ++  DDV 
Subjt:  WPRGNRSGLQTRELAK-----------------TVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVR

Query:  WLHAIF
        WLHAIF
Subjt:  WLHAIF

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.4e-1348.11Show/hide
Query:  WPRGNRSGLQTRELAK-----------------TVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVR
        WPRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES+H+                  EG   ++  DDV 
Subjt:  WPRGNRSGLQTRELAK-----------------TVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVR

Query:  WLHAIF
        WLHAIF
Subjt:  WLHAIF

A0A5A7TKT0 Reverse transcriptase1.7e-1452.58Show/hide
Query:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF
        RA+    WPRGNR  LQT EL KT                 VEIEL +PDTLPTSAESS S+SST +ELY ES+H+E  G   ++  DDV WLHA+F
Subjt:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF

A0A5A7UAH6 CCHC-type domain-containing protein1.7e-1453.41Show/hide
Query:  PRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVRWLHAIF
        PRGNR  L T +L KTVEIEL VPDTLPTSAESS+S+SSTW+ELY ES+H+                  EG   ++  DD+ WLHA+F
Subjt:  PRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI------------------EGQWVLLEEDDVRWLHAIF

A0A5D3BET3 Uncharacterized protein1.1e-1358.11Show/hide
Query:  EKLMVFGMENRAQDFRAKQEDLWPRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI
        E   +FGM  +   +     ++WPRGNR   QT +L KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES+H+
Subjt:  EKLMVFGMENRAQDFRAKQEDLWPRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHI

A0A5D3D150 Reverse transcriptase1.7e-1452.58Show/hide
Query:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF
        RA+    WPRGNR  LQT EL KT                 VEIEL +PDTLPTSAESS S+SST +ELY ES+H+E  G   ++  DDV WLHA+F
Subjt:  RAKQEDLWPRGNRSGLQTRELAKT-----------------VEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIE--GQWVLLEEDDVRWLHAIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTTGTGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAG
GTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGG
TGGAGTTGTATATTGAGTCTATCCATATTGAGGGTCAATGGGTATTGCTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTTGTGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAG
GTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGG
TGGAGTTGTATATTGAGTCTATCCATATTGAGGGTCAATGGGTATTGCTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCTGA
Protein sequenceShow/hide protein sequence
MKEACAKSYEKLMVFGMENRAQDFRAKQEDLWPRGNRSGLQTRELAKTVEIELLVPDTLPTSAESSRSSSSTWVELYIESIHIEGQWVLLEEDDVRWLHAIF