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Spg037170 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037170
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:23948129..23949075
RNA-Seq ExpressionSpg037170
SyntenySpg037170
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]9.1e-1852.88Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPR
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++             ++++ +V  G    +  DDV WLHA+FR K A  P 
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPR

Query:  GGVT
          VT
Subjt:  GGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1555.68Show/hide
Query:  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT
        VEIELPVPDTLPTSAESS  +SSTW+ELY ESV++             ++++ SV  G    +  DDV WLHA+FRAK  GGP GGVT
Subjt:  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2157.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++    ++        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPRGGVTKP
        GGP GGV  P
Subjt:  GGPRGGVTKP

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1853.39Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE    +SSTW+ELY+ESV++  +      VR       EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPRGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPRGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2157.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++    ++        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPRGGVTKP
        GGP GGV  P
Subjt:  GGPRGGVTKP

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein4.4e-1852.88Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPR
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++             ++++ +V  G    +  DDV WLHA+FR K A  P 
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPR

Query:  GGVT
          VT
Subjt:  GGVT

A0A5A7V9N3 Reverse transcriptase1.2e-1555.68Show/hide
Query:  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT
        VEIELPVPDTLPTSAESS  +SSTW+ELY ESV++             ++++ SV  G    +  DDV WLHA+FRAK  GGP GGVT
Subjt:  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT

A0A5A7VMG9 Reverse transcriptase8.6e-2257.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++    ++        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPRGGVTKP
        GGP GGV  P
Subjt:  GGPRGGVTKP

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.2e-1853.39Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE    +SSTW+ELY+ESV++  +      VR       EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPRGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPRGGVT

A0A5D3DX39 Reverse transcriptase8.6e-2257.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++    ++        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPRGGVTKP
        GGP GGV  P
Subjt:  GGPRGGVTKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATACGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATTAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAAAACCTTTGCATTCAAGTCAAACCCTCAACTCTCCATATTCTCCATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATACGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATTAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAAAACCTTTGCATTCAAGTCAAACCCTCAACTCTCCATATTCTCCATCGTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKPLHSSQTLNSPYSPS