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Spg037174 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037174
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:24038777..24048808
RNA-Seq ExpressionSpg037174
SyntenySpg037174
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]4.2e-1280Show/hide
Query:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        DCPLIC GESGQ VDSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-1285.42Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.5e-1246.46Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESTKPRL----------HIHGKHAGVESPRRSVETLRTFFFDPNSRRRRDAGF
        PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ES    +           +H  + G +  + S+E   +  F  +   R+   F
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESTKPRL----------HIHGKHAGVESPRRSVETLRTFFFDPNSRRRRDAGF
TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.9e-1287.5Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-1376.09Show/hide
Query:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
        DCPL C GESGQ VDSI L FWGQDR+GSWEHN TRWNS +P FR+
Subjt:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein2.1e-1280Show/hide
Query:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        DCPLIC GESGQ VDSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
A0A5A7UAH6 CCHC-type domain-containing protein5.4e-1385.42Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
A0A5A7V2F2 Uncharacterized protein1.2e-1246.46Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESTKPRL----------HIHGKHAGVESPRRSVETLRTFFFDPNSRRRRDAGF
        PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ES    +           +H  + G +  + S+E   +  F  +   R+   F
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESTKPRL----------HIHGKHAGVESPRRSVETLRTFFFDPNSRRRRDAGF
A0A5D3BET3 Uncharacterized protein9.2e-1387.5Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
A0A5D3C3J6 Gag/pol protein2.4e-1376.09Show/hide
Query:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
        DCPL C GESGQ VDSI L FWGQDR+GSWEHN TRWNS +P FR+
Subjt:  DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAATACGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATG
GAATTCACTCCTTCCCGACTTTAGGGAAGCAGCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGCCTATGTCCGTGGACACAGAAAATATGTCTGCAG
TGAGAAGAGTACAACTGTCCATTAGGTCCCACTGTGTCTTCCCTACTATTCTCTGGGCCAAGAACGACTTATGGGAGTCTATAGAGATAGACAATGGAAAGGGAATGCTT
GAAGGTTCAAGCACTAGAGAGATATATGGAGATGAAGATATTCCATGCAAGGAAACCCCTCAAGATCCAAGACACATGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAGAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCACTAAACCGAGACTACATATACATGGAAAACACGCTGGCGTCGAGTCGCCAAGGCGCAGCGTCGAGACGCTGCGAACA
TTCTTCTTCGATCCGAATTCGCGTCGGCGTCGAGACGCTGGCTTCATGACTCGACTTCCTGCTCTATTTCTCGGCTTTGTCTCGCTTCTTCTCTCTTCAGGGCTTCAATC
TTTGGCTTTTGGTGTCACAATTCAGGCCCGCTTCAGCACAATTGGGTCTTTTCACCTCCTCGCCGTCCAAGACATTGAGATGGCTCCAAAAACTCCGTTATTGGTGATGA
CCGCAAAGTGCACGGGCCGCAAGTAA
mRNA sequenceShow/hide mRNA sequence
GATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAATACGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATG
GAATTCACTCCTTCCCGACTTTAGGGAAGCAGCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGCCTATGTCCGTGGACACAGAAAATATGTCTGCAG
TGAGAAGAGTACAACTGTCCATTAGGTCCCACTGTGTCTTCCCTACTATTCTCTGGGCCAAGAACGACTTATGGGAGTCTATAGAGATAGACAATGGAAAGGGAATGCTT
GAAGGTTCAAGCACTAGAGAGATATATGGAGATGAAGATATTCCATGCAAGGAAACCCCTCAAGATCCAAGACACATGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAGAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCACTAAACCGAGACTACATATACATGGAAAACACGCTGGCGTCGAGTCGCCAAGGCGCAGCGTCGAGACGCTGCGAACA
TTCTTCTTCGATCCGAATTCGCGTCGGCGTCGAGACGCTGGCTTCATGACTCGACTTCCTGCTCTATTTCTCGGCTTTGTCTCGCTTCTTCTCTCTTCAGGGCTTCAATC
TTTGGCTTTTGGTGTCACAATTCAGGCCCGCTTCAGCACAATTGGGTCTTTTCACCTCCTCGCCGTCCAAGACATTGAGATGGCTCCAAAAACTCCGTTATTGGTGATGA
CCGCAAAGTGCACGGGCCGCAAGTAA
Protein sequenceShow/hide protein sequence
DCPLICMGESGQYVDSISLPFWGQDRMGSWEHNRTRWNSLLPDFREAAGVTDTREGLTSRYWPMSVDTENMSAVRRVQLSIRSHCVFPTILWAKNDLWESIEIDNGKGML
EGSSTREIYGDEDIPCKETPQDPRHMVVMQAKVDSRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESTKPRLHIHGKHAGVESPRRSVETLRT
FFFDPNSRRRRDAGFMTRLPALFLGFVSLLLSSGLQSLAFGVTIQARFSTIGSFHLLAVQDIEMAPKTPLLVMTAKCTGRK