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Spg037177 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037177
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold5:23922749..23924879
RNA-Seq ExpressionSpg037177
SyntenySpg037177
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-2757.66Show/hide
Query:  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------
        TVNLWF LFGL Y EG KRPRGNR SLQTGELDKT                 VEIEL VPDTLPTSAESS S+SSTW                       
Subjt:  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------

Query:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
            F+VS+GST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.3e-2848.95Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-
        TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLR KK+ K   ++   +    T+NLWF L GLSY EG  RPRGNRPSLQTG+LDKT 
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-

Query:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGG
                                   VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF   ++ GP G
Subjt:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.0e-2247.83Show/hide
Query:  TVNLWF-LFGLSYTEGIK----------------------------------------RPRGNRPSLQTGELDKT-----------------VEIELLVP
        TVNLWF LFGLSY EG K                                        +PRGN+PSLQTGELDKT                 VEIEL VP
Subjt:  TVNLWF-LFGLSYTEGIK----------------------------------------RPRGNRPSLQTGELDKT-----------------VEIELLVP

Query:  DTLPTSAESSRSSSSTW-----------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        DTLPTSAES  S+SS +           F+VS+GSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  DTLPTSAESSRSSSSTW-----------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]8.2e-2350.85Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGN
        TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS           + +Q V   N      +   +  K    PRGN
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGN

Query:  RPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF
        R SLQTGELDKT                 VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F
Subjt:  RPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.7e-3340.96Show/hide
Query:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTEGIK-------------------RP
        +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLR KKIGKSSCKA+HCRIW    +      L F   LS  E  K                    P
Subjt:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTEGIK-------------------RP

Query:  RGNRPSLQTGELDK-------------------------------------------------------------------------------TVEIELL
        RGNR SLQTG+LDK                                                                               ++EIELL
Subjt:  RGNRPSLQTGELDK-------------------------------------------------------------------------------TVEIELL

Query:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SSTW                       + S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.2e-2757.66Show/hide
Query:  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------
        TVNLWF LFGL Y EG KRPRGNR SLQTGELDKT                 VEIEL VPDTLPTSAESS S+SSTW                       
Subjt:  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------

Query:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
            F+VS+GST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UGD0 Uncharacterized protein6.3e-2948.95Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-
        TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLR KK+ K   ++   +    T+NLWF L GLSY EG  RPRGNRPSLQTG+LDKT 
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-

Query:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGG
                                   VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF   ++ GP G
Subjt:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.4e-2247.83Show/hide
Query:  TVNLWF-LFGLSYTEGIK----------------------------------------RPRGNRPSLQTGELDKT-----------------VEIELLVP
        TVNLWF LFGLSY EG K                                        +PRGN+PSLQTGELDKT                 VEIEL VP
Subjt:  TVNLWF-LFGLSYTEGIK----------------------------------------RPRGNRPSLQTGELDKT-----------------VEIELLVP

Query:  DTLPTSAESSRSSSSTW-----------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        DTLPTSAES  S+SS +           F+VS+GSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  DTLPTSAESSRSSSSTW-----------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3BZ50 Pentatricopeptide repeat-containing protein4.0e-2350.85Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGN
        TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS           + +Q V   N      +   +  K    PRGN
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGN

Query:  RPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF
        R SLQTGELDKT                 VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F
Subjt:  RPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF

A0A5D3CAC6 Uncharacterized protein3.2e-3340.96Show/hide
Query:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTEGIK-------------------RP
        +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLR KKIGKSSCKA+HCRIW    +      L F   LS  E  K                    P
Subjt:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTEGIK-------------------RP

Query:  RGNRPSLQTGELDK-------------------------------------------------------------------------------TVEIELL
        RGNR SLQTG+LDK                                                                               ++EIELL
Subjt:  RGNRPSLQTGELDK-------------------------------------------------------------------------------TVEIELL

Query:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SSTW                       + S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTCGAAAAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGACCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGC
CGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTCGAAAAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGACCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGC
CGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWFLFGLSYTEGIKRPRGNRPSLQTGELDKTVEIELLVPD
TLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG