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Spg037183 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037183
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:23929837..23932131
RNA-Seq ExpressionSpg037183
SyntenySpg037183
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-2756.83Show/hide
Query:  TVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------
        TVNLWF LFGL Y E  KRPRGNR+SLQTGELDKT                 VEIEL VPDTLPTSAESS S+SSTW                       
Subjt:  TVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------

Query:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
            F+VS+GST IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.3e-2747.92Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-
        TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF L GLSY E   RPRGNR SLQTG+LDKT 
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-

Query:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGDV
                                   VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF   ++ GP G +
Subjt:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGDV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.5e-2046.58Show/hide
Query:  RIWVQTVNLWFLF------GLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSI--------
        + W   + + F F       +S  E ++ PRGNRSSLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSTW  +          
Subjt:  RIWVQTVNLWFLF------GLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSI--------

Query:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
                        GS GIVRGDDVCWLH VFRAK+AGGPGG V
Subjt:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]8.6e-2447.57Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRLKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTERIK---RPRGN
        TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS           + +Q V   N      +   +  K    PRGN
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRLKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTERIK---RPRGN

Query:  RSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYG
        RSSLQTGELDKT                 VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F  +      G++G   +  +EY 
Subjt:  RSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYG

Query:  LSIVES
         SI++S
Subjt:  LSIVES

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-3441.76Show/hide
Query:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTERIK-------------------RP
        +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +      L F   LS  E  K                    P
Subjt:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTERIK-------------------RP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELL
        RGNRSSLQTG+LDK                                                                               ++EIELL
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELL

Query:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        VPDTLPTSAESS S+SSTW                       + S GIVR +DVCWLHAVFRAK+AGG GG V
Subjt:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein4.0e-2756.83Show/hide
Query:  TVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------
        TVNLWF LFGL Y E  KRPRGNR+SLQTGELDKT                 VEIEL VPDTLPTSAESS S+SSTW                       
Subjt:  TVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW-----------------------

Query:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
            F+VS+GST IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  ----FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7UGD0 Uncharacterized protein6.2e-2847.92Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-
        TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF L GLSY E   RPRGNR SLQTG+LDKT 
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-LFGLSYTERIKRPRGNRSSLQTGELDKT-

Query:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGDV
                                   VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF   ++ GP G +
Subjt:  ---------------------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7VIY9 Uncharacterized protein7.3e-2146.58Show/hide
Query:  RIWVQTVNLWFLF------GLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSI--------
        + W   + + F F       +S  E ++ PRGNRSSLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSTW  +          
Subjt:  RIWVQTVNLWFLF------GLSYTERIKRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSI--------

Query:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
                        GS GIVRGDDVCWLH VFRAK+AGGPGG V
Subjt:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3BZ50 Pentatricopeptide repeat-containing protein4.1e-2447.57Show/hide
Query:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRLKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTERIK---RPRGN
        TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS           + +Q V   N      +   +  K    PRGN
Subjt:  TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRLKKIGKSSCKASHC----RIWVQTV---NLWFLFGLSYTERIK---RPRGN

Query:  RSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYG
        RSSLQTGELDKT                 VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F  +      G++G   +  +EY 
Subjt:  RSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYG

Query:  LSIVES
         SI++S
Subjt:  LSIVES

A0A5D3CAC6 Uncharacterized protein8.9e-3541.76Show/hide
Query:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTERIK-------------------RP
        +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +      L F   LS  E  K                    P
Subjt:  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVN------LWFLFGLSYTERIK-------------------RP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELL
        RGNRSSLQTG+LDK                                                                               ++EIELL
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELL

Query:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        VPDTLPTSAESS S+SSTW                       + S GIVR +DVCWLHAVFRAK+AGG GG V
Subjt:  VPDTLPTSAESSRSSSSTWFSV-------------------SIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TATTCGGTTTGAGCTACACAGAAAGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGC
CGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TATTCGGTTTGAGCTACACAGAAAGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGC
CGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACT
AG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFLFGLSYTERIKRPRGNRSSLQTGELDKTVEIELLVPD
TLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYGLSIVESECSQD