; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037194 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037194
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:24295319..24300184
RNA-Seq ExpressionSpg037194
SyntenySpg037194
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]6.6e-3345.45Show/hide
Query:  EDEKCSPVLRYIPLSRHKKGESPFTECPKTIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVF
        E+    P+LRY+PLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KV D+NHITV+EVD  + KEG  QRT  F
Subjt:  EDEKCSPVLRYIPLSRHKKGESPFTECPKTIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVF

Query:  RRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRLSVTTRRD
         RI P VA A VF+RLS+ E + +  Q                         STS++ R S FQRL +   +E G       T+PS F+RLS+T +++
Subjt:  RRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRLSVTTRRD

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]3.2e-3541.74Show/hide
Query:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------KKLLKEGYSLPTTRKG
        ++  V   DEK S  P+LRY+PLSR KKGESPF E P+ +K                                           KKLL+EG+ +P +RKG
Subjt:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------KKLLKEGYSLPTTRKG

Query:  LGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFST
        LGYKSPEP+RITRKGK KV D NHITV+EVD  +EKEG +QRT  F RI P VA A VF+RLS+ E + +  Q  ++  R   F+R+++   +E+    T
Subjt:  LGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFST

Query:  SDVTRPSTFQRLNMPIAKEDGTFSTPDVTR
        S  T+PS F+RL++   K   T   P + R
Subjt:  SDVTRPSTFQRLNMPIAKEDGTFSTPDVTR

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]3.5e-3440Show/hide
Query:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-----------------------------------------------------KKLLKE
        ++  V   DEK S  P+LRY+PLSR KKGESPF E P+ +K                                                     KKLL+E
Subjt:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-----------------------------------------------------KKLLKE

Query:  GYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMP
        G+ +P +RKGLGYKSPEP+RITRKGK KV D+NHITV+EVD  +EKEG +QRT  F RI P VA A VF+RLS+ E E +  Q  ++  +   F+R+++ 
Subjt:  GYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMP

Query:  LGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR
          +E+    TS  T+PS F+RL++   K   T   P + R
Subjt:  LGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]8.7e-3339.36Show/hide
Query:  ASSSGVAAEDEKC--SPVLRYIPLSRHKKGESPFTECPKTIK----------------------------------------------------------
        +S+ G+  +DE    +PVLRY+PLSR KKGESPF E PK +K                                                          
Subjt:  ASSSGVAAEDEKC--SPVLRYIPLSRHKKGESPFTECPKTIK----------------------------------------------------------

Query:  -------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVN
                           KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV D NHIT+EE D++  KEG +QR  VF RIRP VA  +VF+RLS+ 
Subjt:  -------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVN

Query:  ETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNM
        E E E  Q + S  R  VFRR++     EEST      TRPS F+RL +
Subjt:  ETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNM

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.6e-1034.13Show/hide
Query:  FGTLDPVVVRIQKEATMKGSQEKYDSIKDESDGWTLVVCRKKQKQSYARKESHLYRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCPPQPITLAEYFP
        FGT +P+VV+  +E + +  Q +   I+++ +GW +V  RKK++    ++ES  Y++ +R  K+Q+ K+KKK+ + K V  E  +F  P + +TLA++ P
Subjt:  FGTLDPVVVRIQKEATMKGSQEKYDSIKDESDGWTLVVCRKKQKQSYARKESHLYRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCPPQPITLAEYFP

Query:  RSFLDDSKEEALETVTCYVVDVVEDD
        +SFL D ++E  E V C+ ++  E++
Subjt:  RSFLDDSKEEALETVTCYVVDVVEDD

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-0636.44Show/hide
Query:  VASNISKLIEESSKDKVAVKENPLFEYVVPTSKQPKDTLSPDVMSVMMADVDQDERMAEMERKLNLLMKAFGTLDPVVVRIQKEATMKGSQEKYDS--IK
        +A +I K + ES K  + +KENPL+      S +      PDVMSVMMADV  +  MAEMERK+NLLMK     D  +  ++++   + + E   +  +K
Subjt:  VASNISKLIEESSKDKVAVKENPLFEYVVPTSKQPKDTLSPDVMSVMMADVDQDERMAEMERKLNLLMKAFGTLDPVVVRIQKEATMKGSQEKYDS--IK

Query:  DESDGWTLVVCRKKQKQS
         +  G  +V   + Q+QS
Subjt:  DESDGWTLVVCRKKQKQS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.9e-3238.96Show/hide
Query:  ASSSGVAAEDEKC--SPVLRYIPLSRHKKGESPFTECPKTIK----------------------------------------------------------
        +S+ G+  +DE    +PVLRY+PLSR KKGESPF E PK +K                                                          
Subjt:  ASSSGVAAEDEKC--SPVLRYIPLSRHKKGESPFTECPKTIK----------------------------------------------------------

Query:  -------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVN
                           KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV D NHIT+EE D++  KEG +QR  VF RIRP VA  +VF+RLS+ 
Subjt:  -------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVN

Query:  ETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNM
        E E E  Q + +  R  VFRR++     EEST      TRPS F+RL +
Subjt:  ETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNM

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein5.1e-3138.02Show/hide
Query:  DEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------------------------------
        DEK S  P+LRY+PLSR KKGESPF + P+ +K                                                                   
Subjt:  DEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------------------------------

Query:  ----------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQP
                  KKLL+EG+++P +RKGLGYKSPEP+RITRKGK KV D NHITV+EVD  KEKEG  QRT  F RI P VA   VF+RLS+ E E +  Q 
Subjt:  ----------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQP

Query:  INSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRL
         ++  R   F+R++M    E+        TRPS F+RL+M   K      TP   RP +F RL
Subjt:  INSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRL

A0A5A7TJZ7 Retrotransposon gag protein4.8e-0541.56Show/hide
Query:  FGTLDPVVVRIQKEATMKGSQEKYDSIKDESDGWTLVVCRKKQKQSYARKESHLYRDSKRKVKSQRKKEKKKSRRSK
        FGT +PVVV+  +E   + S+EK  SI+++ +GW +V  RKK+K +  +KES  YR+ +R  K+++ K+KKK+++ K
Subjt:  FGTLDPVVVRIQKEATMKGSQEKYDSIKDESDGWTLVVCRKKQKQSYARKESHLYRDSKRKVKSQRKKEKKKSRRSK

A0A5A7TPR5 RNase H domain-containing protein4.6e-3245.31Show/hide
Query:  DEKCSP--VLRYIPLSRHKKGESPFTECPKTIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEG
        DEK S   +LRY+PLSR +KGESPF + P+ +K             KKLL+EG+ +P +RKG GYKSPEP+ I RK K KV D+NHITV EVD  +EKEG
Subjt:  DEKCSP--VLRYIPLSRHKKGESPFTECPKTIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEG

Query:  VDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR
          QR   F +IRP V    VF+RLSV +TE +  Q  +S  +    +R++M    E+ T      TRPS F+RL++   K+  T   P   R
Subjt:  VDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.5e-3541.74Show/hide
Query:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------KKLLKEGYSLPTTRKG
        ++  V   DEK S  P+LRY+PLSR KKGESPF E P+ +K                                           KKLL+EG+ +P +RKG
Subjt:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-------------------------------------------KKLLKEGYSLPTTRKG

Query:  LGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFST
        LGYKSPEP+RITRKGK KV D NHITV+EVD  +EKEG +QRT  F RI P VA A VF+RLS+ E + +  Q  ++  R   F+R+++   +E+    T
Subjt:  LGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFST

Query:  SDVTRPSTFQRLNMPIAKEDGTFSTPDVTR
        S  T+PS F+RL++   K   T   P + R
Subjt:  SDVTRPSTFQRLNMPIAKEDGTFSTPDVTR

A0A5D3C8N8 Ribonuclease H3.2e-3345.45Show/hide
Query:  EDEKCSPVLRYIPLSRHKKGESPFTECPKTIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVF
        E+    P+LRY+PLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KV D+NHITV+EVD  + KEG  QRT  F
Subjt:  EDEKCSPVLRYIPLSRHKKGESPFTECPKTIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVF

Query:  RRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRLSVTTRRD
         RI P VA A VF+RLS+ E + +  Q                         STS++ R S FQRL +   +E G       T+PS F+RLS+T +++
Subjt:  RRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTRPSVFQRLSVTTRRD

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.7e-3440Show/hide
Query:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-----------------------------------------------------KKLLKE
        ++  V   DEK S  P+LRY+PLSR KKGESPF E P+ +K                                                     KKLL+E
Subjt:  SSSGVAAEDEKCS--PVLRYIPLSRHKKGESPFTECPKTIK-----------------------------------------------------KKLLKE

Query:  GYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMP
        G+ +P +RKGLGYKSPEP+RITRKGK KV D+NHITV+EVD  +EKEG +QRT  F RI P VA A VF+RLS+ E E +  Q  ++  +   F+R+++ 
Subjt:  GYSLPTTRKGLGYKSPEPVRITRKGKAKVADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMP

Query:  LGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR
          +E+    TS  T+PS F+RL++   K   T   P + R
Subjt:  LGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTACCCTCTTTATGGCACGAGAGGGATTTCTGTTTGTTGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGCCAACTAA
TCTCATATCGTTGGAGCTTCTGATCTGGTTTTTTATCTCTGCACATACTCCTCTGGTTGTTGCAAGCAACATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTG
CAGTCAAAGAAAACCCACTGTTCGAATATGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAGTCCTGATGTGATGTCCGTCATGATGGCTGATGTAGATCAGGAT
GAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTTTTAATGAAGGCATTCGGGACCCTTGATCCTGTAGTGGTTCGAATCCAAAAAGAAGCTACAATGAAAGGATCCCA
AGAAAAATATGATTCCATCAAAGATGAGAGCGACGGTTGGACCCTTGTCGTGTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCACCTATATCGAGATA
GTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACT
TTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACTGTCACGTGTTACGTTGTGGACGTGGTGGAAGATGATGACGTCCTCGCTAG
CTCCTCGGGAGTGGCGGCAGAGGATGAGAAGTGTTCACCTGTCCTACGATACATCCCTTTATCCCGGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAACCA
TAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACAAGAAAAGGACTTGGATATAAGTCGCCCGAACCAGTTCGCATAACAAGAAAAGGGAAGGCAAAAGTG
GCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAGGTGTCGACCAACGAACTTATGTTTTTAGGCGCATCAGGCCACCAGTTGCTCATGC
TTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGCACACAACCTATTAATAGCTCCACTCGACCTTTGGTTTTCCGAAGGATAAGTATGCCCCTTGGAG
ATGAAGAGAGTACATTTTCAACTTCGGATGTCACTCGACCTTCAACTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGATGGTACATTTTCAACTCCGGATGTGACT
CGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCTACCCTCTTTATGGCACGAGAGGGATTTCTGTTTGTTGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGCCAACTAA
TCTCATATCGTTGGAGCTTCTGATCTGGTTTTTTATCTCTGCACATACTCCTCTGGTTGTTGCAAGCAACATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTG
CAGTCAAAGAAAACCCACTGTTCGAATATGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAGTCCTGATGTGATGTCCGTCATGATGGCTGATGTAGATCAGGAT
GAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTTTTAATGAAGGCATTCGGGACCCTTGATCCTGTAGTGGTTCGAATCCAAAAAGAAGCTACAATGAAAGGATCCCA
AGAAAAATATGATTCCATCAAAGATGAGAGCGACGGTTGGACCCTTGTCGTGTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCACCTATATCGAGATA
GTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACT
TTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACTGTCACGTGTTACGTTGTGGACGTGGTGGAAGATGATGACGTCCTCGCTAG
CTCCTCGGGAGTGGCGGCAGAGGATGAGAAGTGTTCACCTGTCCTACGATACATCCCTTTATCCCGGCATAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAACCA
TAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACAAGAAAAGGACTTGGATATAAGTCGCCCGAACCAGTTCGCATAACAAGAAAAGGGAAGGCAAAAGTG
GCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAGGTGTCGACCAACGAACTTATGTTTTTAGGCGCATCAGGCCACCAGTTGCTCATGC
TTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGCACACAACCTATTAATAGCTCCACTCGACCTTTGGTTTTCCGAAGGATAAGTATGCCCCTTGGAG
ATGAAGAGAGTACATTTTCAACTTCGGATGTCACTCGACCTTCAACTTTTCAAAGGTTAAATATGCCCATTGCGAAAGAAGATGGTACATTTTCAACTCCGGATGTGACT
CGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAGTAG
Protein sequenceShow/hide protein sequence
MGPTLFMAREGFLFVGWTTNRLFIRGALVLKDQEPTNLISLELLIWFFISAHTPLVVASNISKLIEESSKDKVAVKENPLFEYVVPTSKQPKDTLSPDVMSVMMADVDQD
ERMAEMERKLNLLMKAFGTLDPVVVRIQKEATMKGSQEKYDSIKDESDGWTLVVCRKKQKQSYARKESHLYRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCPPQPIT
LAEYFPRSFLDDSKEEALETVTCYVVDVVEDDDVLASSSGVAAEDEKCSPVLRYIPLSRHKKGESPFTECPKTIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKV
ADTNHITVEEVDDSKEKEGVDQRTYVFRRIRPPVAHALVFQRLSVNETEEESTQPINSSTRPLVFRRISMPLGDEESTFSTSDVTRPSTFQRLNMPIAKEDGTFSTPDVT
RPSVFQRLSVTTRRDKKE