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Spg037223 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037223
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:36837284..36841994
RNA-Seq ExpressionSpg037223
SyntenySpg037223
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]4.3e-2157Show/hide
Query:  PRGNRSSLQIGELGKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGL
        PRGNR +L  G+L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG PGGG+
Subjt:  PRGNRSSLQIGELGKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGL

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2049.61Show/hide
Query:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ GEL  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP
         WLHA+FRAK  GGPGGG+       H P
Subjt:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.3e-2051.67Show/hide
Query:  PRGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        PRGNRSSLQ GEL KT                 VEIELPVPDTLPTSAES  S+SSTW+ELY E VH+  + +             EG    +  DDV W
Subjt:  PRGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGLEQR
        LH +FRAK+AGGPGGG+ +R
Subjt:  LHAIFRAKLAGGPGGGLEQR

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.7e-2153.39Show/hide
Query:  PRGNRSSLQIGELGKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQ GEL KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQIGELGKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGL
        WLHA+FRAK  GGPGGG+
Subjt:  WLHAIFRAKLAGGPGGGL

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.2e-2049.61Show/hide
Query:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ GEL  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP
         WLHA+FRAK  GGPGGG+       H P
Subjt:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein2.1e-2157Show/hide
Query:  PRGNRSSLQIGELGKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGL
        PRGNR +L  G+L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG PGGG+
Subjt:  PRGNRSSLQIGELGKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGL

A0A5A7V9N3 Reverse transcriptase1.0e-2049.61Show/hide
Query:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ GEL  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP
         WLHA+FRAK  GGPGGG+       H P
Subjt:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP

A0A5A7VIY9 Uncharacterized protein6.1e-2151.67Show/hide
Query:  PRGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        PRGNRSSLQ GEL KT                 VEIELPVPDTLPTSAES  S+SSTW+ELY E VH+  + +             EG    +  DDV W
Subjt:  PRGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGLEQR
        LH +FRAK+AGGPGGG+ +R
Subjt:  LHAIFRAKLAGGPGGGLEQR

A0A5D3CJX3 CCHC-type domain-containing protein2.7e-2153.39Show/hide
Query:  PRGNRSSLQIGELGKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQ GEL KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQIGELGKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGL
        WLHA+FRAK  GGPGGG+
Subjt:  WLHAIFRAKLAGGPGGGL

A0A5D3DSY7 Putative Retrotransposon protein1.0e-2049.61Show/hide
Query:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ GEL  T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQIGELGKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP
         WLHA+FRAK  GGPGGG+       H P
Subjt:  RWLHAIFRAKLAGGPGGGLEQRALPSHWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTGAAGGAGAGAGTGAAGGAAGAAGAAGAACAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGCCAAG
AGGAAATAGGTCGAGTCTACAAATCGGGGAACTAGGTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCA
GTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAATGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCAC
GCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTCTTGAACAAAGGGCCCTACCCTCTCATTGGCCCGAGAGGGGTTTTCTGTTTGATGGTTGGACCACAAA
CAGGTCTTGGAATGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGCTAGTAGAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATG
ATGATAACCGGGTAATCTCATTAAGTGAGAAGACTGCAGCTGTGGGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
CACTTGAAGGAGAGAGTGAAGGAAGAAGAAGAACAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGCCAAG
AGGAAATAGGTCGAGTCTACAAATCGGGGAACTAGGTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCA
GTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAATGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCAC
GCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTCTTGAACAAAGGGCCCTACCCTCTCATTGGCCCGAGAGGGGTTTTCTGTTTGATGGTTGGACCACAAA
CAGGTCTTGGAATGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGCTAGTAGAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATG
ATGATAACCGGGTAATCTCATTAAGTGAGAAGACTGCAGCTGTGGGTCTTTAG
Protein sequenceShow/hide protein sequence
HLKERVKEEEEQEFRGFEVEEDRKAHAKPAIAESEPRGNRSSLQIGELGKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLH
AIFRAKLAGGPGGGLEQRALPSHWPERGFLFDGWTTNRSWNGLWDPQLIGIGKESLWLVEGPNGPTDHGLQRNDDNRVISLSEKTAAVGL