; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037229 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037229
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:36895427..36901147
RNA-Seq ExpressionSpg037229
SyntenySpg037229
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.1e-1280Show/hide
Query:  MIEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ NTW+ELY ESV+
Subjt:  MIEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.7e-0940.71Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM
        M EILS R YGTVCTQ                 VEIELPVPDTLP+S ES  S+S+TW+ELY E V+         ++    + Q    + L + G+DQ 
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM

Query:  GARNITVQDGIHS
        G+   T+  G  S
Subjt:  GARNITVQDGIHS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1162.69Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E V+
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.7e-0940.71Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM
        M EILS R YGTVCTQ                 VEIELPVPDTLP+S ES  S+S+TW+ELY E V+         ++    + Q    + L + G+DQ 
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM

Query:  GARNITVQDGIHS
        G+   T+  G  S
Subjt:  GARNITVQDGIHS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1162.69Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E V+
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein5.3e-1380Show/hide
Query:  MIEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ NTW+ELY ESV+
Subjt:  MIEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein2.7e-0940.71Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM
        M EILS R YGTVCTQ                 VEIELPVPDTLP+S ES  S+S+TW+ELY E V+         ++    + Q    + L + G+DQ 
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM

Query:  GARNITVQDGIHS
        G+   T+  G  S
Subjt:  GARNITVQDGIHS

A0A5A7VMG9 Reverse transcriptase1.7e-1162.69Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E V+
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein2.7e-0940.71Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM
        M EILS R YGTVCTQ                 VEIELPVPDTLP+S ES  S+S+TW+ELY E V+         ++    + Q    + L + G+DQ 
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQM

Query:  GARNITVQDGIHS
        G+   T+  G  S
Subjt:  GARNITVQDGIHS

A0A5D3DX39 Reverse transcriptase1.7e-1162.69Show/hide
Query:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E V+
Subjt:  MIEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGAGGGATTGTCCTCAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGGCTCAATAA
TCCTACCATTTCAGGGGCAAGATCAAATGGGGGCTAGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGAGGGATTGTCCTCAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGGCTCAATAA
TCCTACCATTTCAGGGGCAAGATCAAATGGGGGCTAGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAG
Protein sequenceShow/hide protein sequence
MIEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLRDCPQICMGESGQFAGSIILPFQGQDQMGARNITVQDGIHSFPYWGK