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Spg037233 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037233
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:36749564..36751408
RNA-Seq ExpressionSpg037233
SyntenySpg037233
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2650.3Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST
        STGFSSKPGG LVFS  LSI        ++   I   WPRGNR  LQTGELDK +     T  +L           VEIELP+PDTLPTS ES  ++SST
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST

Query:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN
        W+ELYFESVH+  +                 S   +  DDV WLHAIFRAK AGGPGGGV  S S++
Subjt:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-2963.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+SIDYMT ILS R YGTVCTQ                 VEIELPVPDTLP
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP

Query:  TSPESFRTSSSTWVELYFESVHI
        +S ESF ++SSTW+ELYFE VH+
Subjt:  TSPESFRTSSSTWVELYFESVHI

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-2956.29Show/hide
Query:  IRSSIW-PRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSPESFRTSSSTWVELYFESVHI----
        I  + W PR NR SLQTGELDKT+SIDYMT ILS RL GTVCTQ                 VEIELPVPDTLPTS E F ++SSTW+ELY ESVH+    
Subjt:  IRSSIW-PRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSPESFRTSSSTWVELYFESVHI----

Query:  ---VNVLRVSRVSLE-------EDDVRWLHAIFRAKLAGGPGGGVRLSVSL
            +V   S V  E        DDV WLHA+FRAK AGGP GGV  SV L
Subjt:  ---VNVLRVSRVSLE-------EDDVRWLHAIFRAKLAGGPGGGVRLSVSL

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2650.3Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST
        STGFSSKPGG LVFS  LSI        ++   I   WPRGNR  LQTGELDK +     T  +L           VEIELP+PDTLPTS ES  ++SST
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST

Query:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN
        W+ELYFESVH+  +                 S   +  DDV WLHAIFRAK AGGPGGGV  S S++
Subjt:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-2963.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+SIDYMT ILS R YGTVCTQ                 VEIELPVPDTLP
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP

Query:  TSPESFRTSSSTWVELYFESVHI
        +S ESF ++SSTW+ELYFE VH+
Subjt:  TSPESFRTSSSTWVELYFESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.0e-2750.3Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST
        STGFSSKPGG LVFS  LSI        ++   I   WPRGNR  LQTGELDK +     T  +L           VEIELP+PDTLPTS ES  ++SST
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST

Query:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN
        W+ELYFESVH+  +                 S   +  DDV WLHAIFRAK AGGPGGGV  S S++
Subjt:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein2.9e-2963.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+SIDYMT ILS R YGTVCTQ                 VEIELPVPDTLP
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP

Query:  TSPESFRTSSSTWVELYFESVHI
        +S ESF ++SSTW+ELYFE VH+
Subjt:  TSPESFRTSSSTWVELYFESVHI

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.7e-2956.29Show/hide
Query:  IRSSIW-PRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSPESFRTSSSTWVELYFESVHI----
        I  + W PR NR SLQTGELDKT+SIDYMT ILS RL GTVCTQ                 VEIELPVPDTLPTS E F ++SSTW+ELY ESVH+    
Subjt:  IRSSIW-PRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSPESFRTSSSTWVELYFESVHI----

Query:  ---VNVLRVSRVSLE-------EDDVRWLHAIFRAKLAGGPGGGVRLSVSL
            +V   S V  E        DDV WLHA+FRAK AGGP GGV  SV L
Subjt:  ---VNVLRVSRVSLE-------EDDVRWLHAIFRAKLAGGPGGGVRLSVSL

A0A5D3DR18 Gag/pol protein6.0e-2750.3Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST
        STGFSSKPGG LVFS  LSI        ++   I   WPRGNR  LQTGELDK +     T  +L           VEIELP+PDTLPTS ES  ++SST
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSI---WPRGNRSSLQTGELDKTISIDYMT-GILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSST

Query:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN
        W+ELYFESVH+  +                 S   +  DDV WLHAIFRAK AGGPGGGV  S S++
Subjt:  WVELYFESVHIVNVL--------------RVSRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLN

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein2.9e-2963.41Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+SIDYMT ILS R YGTVCTQ                 VEIELPVPDTLP
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQ-----------------VEIELPVPDTLP

Query:  TSPESFRTSSSTWVELYFESVHI
        +S ESF ++SSTW+ELYFE VH+
Subjt:  TSPESFRTSSSTWVELYFESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCGGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGGGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTCCTGAAAGTTTCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATTTTGAGTCTGTTCATATTGTAAATGTTTTGAGGGTC
AGCAGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGAGACTATCAGTGTCACTGAATAT
CTTTTTCAGCGACAACGGGCCGGACGTTGCTGAAAGTGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
AGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCGGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGGGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTCCTGAAAGTTTCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATTTTGAGTCTGTTCATATTGTAAATGTTTTGAGGGTC
AGCAGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGAGACTATCAGTGTCACTGAATAT
CTTTTTCAGCGACAACGGGCCGGACGTTGCTGAAAGTGATCTTTAG
Protein sequenceShow/hide protein sequence
STGFSSKPGGSLVFSGVLSILGCTSRIRSSIWPRGNRSSLQTGELDKTISIDYMTGILSPRLYGTVCTQVEIELPVPDTLPTSPESFRTSSSTWVELYFESVHIVNVLRV
SRVSLEEDDVRWLHAIFRAKLAGGPGGGVRLSVSLNIFFSDNGPDVAESDL