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Spg037235 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037235
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:36585482..36588180
RNA-Seq ExpressionSpg037235
SyntenySpg037235
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1850.42Show/hide
Query:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW
        PRGNR  LQTGELDK                  VEIELP+ DTL TSAESS ++SSTW+ELY ESVH+  + +   + R  S          +  DDV W
Subjt:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGPGGAEIP
        LHAIFRAK AGGPGG   P
Subjt:  LHAIFRAKLAGGPGGAEIP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.4e-2050.41Show/hide
Query:  VFGNEEFDVPRGNRSSLQTGELDKTVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLF---NVR-------EGRRVSLEEDDVRWLHAIFRAK
        VF +    +PRGNR +L TG+LDKTVEIELPV DTL TSAESS+++SSTW+ELY ESVH+  + +   +VR       EG    +  DD+ WLHA+F AK
Subjt:  VFGNEEFDVPRGNRSSLQTGELDKTVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLF---NVR-------EGRRVSLEEDDVRWLHAIFRAK

Query:  LAGGPGGAEIPLNPRKNSSKN
         AG PGG  +P    +   +N
Subjt:  LAGGPGGAEIPLNPRKNSSKN

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.5e-1948.8Show/hide
Query:  RVFGNEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS--------
        R+   E  ++PRGNRSSLQTGELDKT                 VEIELPV DTL TSAES  ++SSTW+ELY E VH+  + +   + R  S        
Subjt:  RVFGNEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS--------

Query:  --LEEDDVRWLHAIFRAKLAGGPGG
          +  DDV WLH +FRAK+AGGPGG
Subjt:  --LEEDDVRWLHAIFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.6e-1952.59Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVLDTLLTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGRRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELPV DTL TSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVLDTLLTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGRRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHA+FRAK  GGPGG
Subjt:  WLHAIFRAKLAGGPGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1850.42Show/hide
Query:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW
        PRGNR  LQTGELDK                  VEIELP+ DTL TSAESS ++SSTW+ELY ESVH+  + +   + R  S          +  DDV W
Subjt:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGPGGAEIP
        LHAIFRAK AGGPGG   P
Subjt:  LHAIFRAKLAGGPGGAEIP

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.3e-1950.42Show/hide
Query:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW
        PRGNR  LQTGELDK                  VEIELP+ DTL TSAESS ++SSTW+ELY ESVH+  + +   + R  S          +  DDV W
Subjt:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGPGGAEIP
        LHAIFRAK AGGPGG   P
Subjt:  LHAIFRAKLAGGPGGAEIP

A0A5A7UAH6 CCHC-type domain-containing protein6.7e-2150.41Show/hide
Query:  VFGNEEFDVPRGNRSSLQTGELDKTVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLF---NVR-------EGRRVSLEEDDVRWLHAIFRAK
        VF +    +PRGNR +L TG+LDKTVEIELPV DTL TSAESS+++SSTW+ELY ESVH+  + +   +VR       EG    +  DD+ WLHA+F AK
Subjt:  VFGNEEFDVPRGNRSSLQTGELDKTVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLF---NVR-------EGRRVSLEEDDVRWLHAIFRAK

Query:  LAGGPGGAEIPLNPRKNSSKN
         AG PGG  +P    +   +N
Subjt:  LAGGPGGAEIPLNPRKNSSKN

A0A5A7VIY9 Uncharacterized protein7.5e-2048.8Show/hide
Query:  RVFGNEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS--------
        R+   E  ++PRGNRSSLQTGELDKT                 VEIELPV DTL TSAES  ++SSTW+ELY E VH+  + +   + R  S        
Subjt:  RVFGNEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS--------

Query:  --LEEDDVRWLHAIFRAKLAGGPGG
          +  DDV WLH +FRAK+AGGPGG
Subjt:  --LEEDDVRWLHAIFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein3.7e-1952.59Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVLDTLLTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGRRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELPV DTL TSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVLDTLLTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVREGRRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHA+FRAK  GGPGG
Subjt:  WLHAIFRAKLAGGPGG

A0A5D3DR18 Gag/pol protein6.3e-1950.42Show/hide
Query:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW
        PRGNR  LQTGELDK                  VEIELP+ DTL TSAESS ++SSTW+ELY ESVH+  + +   + R  S          +  DDV W
Subjt:  PRGNRSSLQTGELDK-----------------TVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGPGGAEIP
        LHAIFRAK AGGPGG   P
Subjt:  LHAIFRAKLAGGPGGAEIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAATCTTATTCAAGTTCCTGTAAGTTGTAGAGTGTTCGGAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAA
GACAGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCTAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTG
TAAATGTTTTGTTCAACGTTCGGGAGGGTCGGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GCTGAAATTCCCTTGAATCCACGCAAAAACAGCAGCAAAAACGTCCTTTTTCTTGCTTTAAATTTGTCACGAACACCACCACGTAAGTTGCACCGGTATCCTCTTGGGGC
AATCGATGAAGGTGCTTGTGGGAGCAAGATTTCTAAGGCAAAAGAGAATTTTCTTCCCTGTTTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAATCTTATTCAAGTTCCTGTAAGTTGTAGAGTGTTCGGAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAA
GACAGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCTAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTG
TAAATGTTTTGTTCAACGTTCGGGAGGGTCGGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GCTGAAATTCCCTTGAATCCACGCAAAAACAGCAGCAAAAACGTCCTTTTTCTTGCTTTAAATTTGTCACGAACACCACCACGTAAGTTGCACCGGTATCCTCTTGGGGC
AATCGATGAAGGTGCTTGTGGGAGCAAGATTTCTAAGGCAAAAGAGAATTTTCTTCCCTGTTTTCTTTGA
Protein sequenceShow/hide protein sequence
MVGNLIQVPVSCRVFGNEEFDVPRGNRSSLQTGELDKTVEIELPVLDTLLTSAESSRTSSSTWVELYIESVHIVNVLFNVREGRRVSLEEDDVRWLHAIFRAKLAGGPGG
AEIPLNPRKNSSKNVLFLALNLSRTPPRKLHRYPLGAIDEGACGSKISKAKENFLPCFL