; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:36829929..36831990
RNA-Seq ExpressionSpg037236
SyntenySpg037236
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-1759.55Show/hide
Query:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ
        PRGNR  LQTGELD               PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ LY ESVH+  + +   + +
Subjt:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.5e-1945.24Show/hide
Query:  TTDSNFYQLILGHSSQYFPPKISEHLRERVKEEEEEEFRGFEGSREPRICVVCVRGNSGQ--------IGWASHFPFFRPRGNRSSLQTGELDIEPEAIW
        TTD   +Q        +F  K+SE+ +ERVK EEEEEFRG    +  +        N G         IG +      RPRGNR SLQTG+LD       
Subjt:  TTDSNFYQLILGHSSQYFPPKISEHLRERVKEEEEEEFRGFEGSREPRICVVCVRGNSGQ--------IGWASHFPFFRPRGNRSSLQTGELDIEPEAIW

Query:  YRVHTGYIPLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
            T    L TLSVLRDNDAV           VEIELP+PDTLPT AES  S+SSTW+ LY ESVH+
Subjt:  YRVHTGYIPLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.5e-1871.43Show/hide
Query:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
        RGNRSSLQ+GELD           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ LY ESVH+
Subjt:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-1759.55Show/hide
Query:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ
        PRGNR  LQTGELD               PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ LY ESVH+  + +   + +
Subjt:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.5e-1871.43Show/hide
Query:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
        RGNRSSLQ+GELD           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ LY ESVH+
Subjt:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.0e-1759.55Show/hide
Query:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ
        PRGNR  LQTGELD               PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ LY ESVH+  + +   + +
Subjt:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ

A0A5A7UGD0 Uncharacterized protein7.5e-2045.24Show/hide
Query:  TTDSNFYQLILGHSSQYFPPKISEHLRERVKEEEEEEFRGFEGSREPRICVVCVRGNSGQ--------IGWASHFPFFRPRGNRSSLQTGELDIEPEAIW
        TTD   +Q        +F  K+SE+ +ERVK EEEEEFRG    +  +        N G         IG +      RPRGNR SLQTG+LD       
Subjt:  TTDSNFYQLILGHSSQYFPPKISEHLRERVKEEEEEEFRGFEGSREPRICVVCVRGNSGQ--------IGWASHFPFFRPRGNRSSLQTGELDIEPEAIW

Query:  YRVHTGYIPLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
            T    L TLSVLRDNDAV           VEIELP+PDTLPT AES  S+SSTW+ LY ESVH+
Subjt:  YRVHTGYIPLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

A0A5A7V9N3 Reverse transcriptase3.1e-1871.43Show/hide
Query:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
        RGNRSSLQ+GELD           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ LY ESVH+
Subjt:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

A0A5D3DR18 Gag/pol protein2.0e-1759.55Show/hide
Query:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ
        PRGNR  LQTGELD               PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ LY ESVH+  + +   + +
Subjt:  PRGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQ

A0A5D3DSY7 Putative Retrotransposon protein3.1e-1871.43Show/hide
Query:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI
        RGNRSSLQ+GELD           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ LY ESVH+
Subjt:  RGNRSSLQTGELDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAATGACTCCACCACCGACAGCAATTTTTATCAGCTCATTTTAGGCCATTCTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGCATCTC
ATTTTCCTTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTG
TTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCTAGATCAAGCTCTAGTACGTG
GGTGGTGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAATGACTCCACCACCGACAGCAATTTTTATCAGCTCATTTTAGGCCATTCTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGCATCTC
ATTTTCCTTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTG
TTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCTAGATCAAGCTCTAGTACGTG
GGTGGTGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGG
Protein sequenceShow/hide protein sequence
MEMDSNDSTTDSNFYQLILGHSSQYFPPKISEHLRERVKEEEEEEFRGFEGSREPRICVVCVRGNSGQIGWASHFPFFRPRGNRSSLQTGELDIEPEAIWYRVHTGYIPL
LTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWVVLYIESVHIVNVLFNVQEGQR