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Spg037242 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037242
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:30382946..30387980
RNA-Seq ExpressionSpg037242
SyntenySpg037242
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.1e-1141.13Show/hide
Query:  QHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEAQDFRAKQEDLWFSLMFRAFWGVQVESEALYVFHEEAELYSV------DDGVLRDNDAI-----
        ++ +ERVKEEEEE FRGLRLKK+ K     T+    A        +LWF L+  ++    +         +  +L            VLRDNDA+     
Subjt:  QHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEAQDFRAKQEDLWFSLMFRAFWGVQVESEALYVFHEEAELYSV------DDGVLRDNDAI-----

Query:  ------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
              VEIELP+PDTLPT+AES  ++SSTW+ELY ESVH+
Subjt:  ------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-1081.4Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY ESVH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-1079.07Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY+E VH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.4e-1081.4Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY ESVH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-1079.07Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY+E VH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein1.5e-1141.13Show/hide
Query:  QHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEAQDFRAKQEDLWFSLMFRAFWGVQVESEALYVFHEEAELYSV------DDGVLRDNDAI-----
        ++ +ERVKEEEEE FRGLRLKK+ K     T+    A        +LWF L+  ++    +         +  +L            VLRDNDA+     
Subjt:  QHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEAQDFRAKQEDLWFSLMFRAFWGVQVESEALYVFHEEAELYSV------DDGVLRDNDAI-----

Query:  ------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
              VEIELP+PDTLPT+AES  ++SSTW+ELY ESVH+
Subjt:  ------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
A0A5A7V9N3 Reverse transcriptase2.1e-1081.4Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY ESVH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
A0A5A7VMG9 Reverse transcriptase4.8e-1079.07Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY+E VH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
A0A5D3DSY7 Putative Retrotransposon protein2.1e-1081.4Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY ESVH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
A0A5D3DX39 Reverse transcriptase4.8e-1079.07Show/hide
Query:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
        VLRDNDA+VEIELPVPDTLPT AESS ++SSTW+ELY+E VH+
Subjt:  VLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCAACGAACGAAAACGCAGCAGCCTCCTTGCCTCTTAATTGCTGGAATTTTCTTCTTGATTGACACAATAACCACAAAGGTTACACCGACTCACAGTTGCACTCT
TCTCACTGCAGACATATTTTCTGTGTCCACGGATATAGACCAATATCGACTAGTTAGTCCTTCACGAGTGTCCGTAACACCAGCTGGGTCAAATTATCAGCACTTGAGGG
AGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAAGCACAGGATTTTCGA
GCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATATGTTTTTCACGAGGAAGCTGAGTTGTATTCCGT
TGATGACGGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTATGCTGAAAGTTCCAGAACAAGCTCCAGTACATGGG
TGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCAACGAACGAAAACGCAGCAGCCTCCTTGCCTCTTAATTGCTGGAATTTTCTTCTTGATTGACACAATAACCACAAAGGTTACACCGACTCACAGTTGCACTCT
TCTCACTGCAGACATATTTTCTGTGTCCACGGATATAGACCAATATCGACTAGTTAGTCCTTCACGAGTGTCCGTAACACCAGCTGGGTCAAATTATCAGCACTTGAGGG
AGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAAGCACAGGATTTTCGA
GCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATATGTTTTTCACGAGGAAGCTGAGTTGTATTCCGT
TGATGACGGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTATGCTGAAAGTTCCAGAACAAGCTCCAGTACATGGG
TGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MLQRTKTQQPPCLLIAGIFFLIDTITTKVTPTHSCTLLTADIFSVSTDIDQYRLVSPSRVSVTPAGSNYQHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEAQDFR
AKQEDLWFSLMFRAFWGVQVESEALYVFHEEAELYSVDDGVLRDNDAIVEIELPVPDTLPTYAESSRTSSSTWVELYIESVHIVNVL