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Spg037246 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037246
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:30398984..30404393
RNA-Seq ExpressionSpg037246
SyntenySpg037246
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-2660Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP
        VLRDND VVEIELP+PDTLPTSAESS ++SST +ELY ESVH+         G    +  DDV WLHA+FRAK              GP        VMP
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP

Query:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        PRT+RRRRQNQDGTQDPTQ QS+RGSSTPR
Subjt:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.8e-2655.24Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEY
        VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+EL  E VH+             ++++FNV  G    +  D+V WLHA+F AK A            
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEY

Query:  GPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        GP        VMPPRT+RRRRQNQD  QDPTQ QS+RGSSTPR
Subjt:  GPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2647.06Show/hide
Query:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA
        ++ S  L+G V   + FP + +          VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA
Subjt:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP
        +FRAK A            GP        VMPP T++RRR NQDG Q PTQ QS+RGSSTPR     +S R + S      P   RP
Subjt:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-2660Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP
        VLRDND VVEIELP+PDTLPTSAESS ++SST +ELY ESVH+         G    +  DDV WLHA+FRAK              GP        VMP
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP

Query:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        PRT+RRRRQNQDGTQDPTQ QS+RGSSTPR
Subjt:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2647.06Show/hide
Query:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA
        ++ S  L+G V   + FP + +          VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA
Subjt:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP
        +FRAK A            GP        VMPP T++RRR NQDG Q PTQ QS+RGSSTPR     +S R + S      P   RP
Subjt:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.7e-2660Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP
        VLRDND VVEIELP+PDTLPTSAESS ++SST +ELY ESVH+         G    +  DDV WLHA+FRAK              GP        VMP
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP

Query:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        PRT+RRRRQNQDGTQDPTQ QS+RGSSTPR
Subjt:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.8e-2655.24Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEY
        VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+EL  E VH+             ++++FNV  G    +  D+V WLHA+F AK A            
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEY

Query:  GPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        GP        VMPPRT+RRRRQNQD  QDPTQ QS+RGSSTPR
Subjt:  GPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

A0A5A7VMG9 Reverse transcriptase1.0e-2647.06Show/hide
Query:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA
        ++ S  L+G V   + FP + +          VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA
Subjt:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP
        +FRAK A            GP        VMPP T++RRR NQDG Q PTQ QS+RGSSTPR     +S R + S      P   RP
Subjt:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP

A0A5D3D150 Reverse transcriptase1.7e-2660Show/hide
Query:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP
        VLRDND VVEIELP+PDTLPTSAESS ++SST +ELY ESVH+         G    +  DDV WLHA+FRAK              GP        VMP
Subjt:  VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMP

Query:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR
        PRT+RRRRQNQDGTQDPTQ QS+RGSSTPR
Subjt:  PRTNRRRRQNQDGTQDPTQSQSKRGSSTPR

A0A5D3DX39 Reverse transcriptase1.0e-2647.06Show/hide
Query:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA
        ++ S  L+G V   + FP + +          VLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA
Subjt:  QVESEALFGRVGNLIQFPTTFMKILLYSVVDGVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHA

Query:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP
        +FRAK A            GP        VMPP T++RRR NQDG Q PTQ QS+RGSSTPR     +S R + S      P   RP
Subjt:  IFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQNQDGTQDPTQSQSKRGSSTPR-VLLADSSRNSGSFGMCFNPNEVRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTGACGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAA
CCTGTCAACCTCTGGTTGTTTACTCGGTTTGAGCTACACAGAAGGAATTAAGAGAGCACAGGATTTTCAAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAG
CATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGGGTTGGAAATCTTATTCAATTTCCTACAACTTTCATGAAGATTTTGTTATATTCCGTTGTTGACGGT
GTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACATGGGTGGAGTTGTA
TATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGC
TAGCAGACGCTGAGTTAGTTCAGAAAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGAGTCATGCCACCACGTACCAATAGACGACGCAGGCAGAAT
CAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTAAAAGGGGATCCAGTACCCCGAGAGTATTATTAGCGGATTCCTCCCGGAACTCCGGATCTTTTGGAATGTGTTT
CAACCCCAATGAAGTGCGACCGATCAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
CACTTGACGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAA
CCTGTCAACCTCTGGTTGTTTACTCGGTTTGAGCTACACAGAAGGAATTAAGAGAGCACAGGATTTTCAAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAG
CATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGGGTTGGAAATCTTATTCAATTTCCTACAACTTTCATGAAGATTTTGTTATATTCCGTTGTTGACGGT
GTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACATGGGTGGAGTTGTA
TATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGC
TAGCAGACGCTGAGTTAGTTCAGAAAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGAGTCATGCCACCACGTACCAATAGACGACGCAGGCAGAAT
CAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTAAAAGGGGATCCAGTACCCCGAGAGTATTATTAGCGGATTCCTCCCGGAACTCCGGATCTTTTGGAATGTGTTT
CAACCCCAATGAAGTGCGACCGATCAAGCACTAG
Protein sequenceShow/hide protein sequence
HLTERVKEEEEEDFRGLRLKKIGKAHAKPTIAESEFNLSTSGCLLGLSYTEGIKRAQDFQAKQEDLWFSLVFRAFWGVQVESEALFGRVGNLIQFPTTFMKILLYSVVDG
VLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLADAELVQKELAEYGPSIVESESRVMPPRTNRRRRQN
QDGTQDPTQSQSKRGSSTPRVLLADSSRNSGSFGMCFNPNEVRPIKH