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Spg037255 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037255
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:15001846..15003500
RNA-Seq ExpressionSpg037255
SyntenySpg037255
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]1.7e-0843.82Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V  +  K +    +   A L+AI  GL+L  S G    V+ESDC LAI  IN
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN

XP_015386618.1 uncharacterized protein LOC107177388 [Citrus sinensis]1.4e-0734.21Show/hide
Query:  DSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN--
        +SS++++ ++W PP   + K+N DAA   +     LG++ RN +G V  AA K      +   AE+ AI  G+++    G T +++ESDCQ AI+  N  
Subjt:  DSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN--

Query:  ---KVSLIWVAHEI
           K  + WV  EI
Subjt:  ---KVSLIWVAHEI

XP_015388012.1 uncharacterized protein LOC107177940 [Citrus sinensis]3.8e-0832.09Show/hide
Query:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQ
        M+ K  +  SS+     +RW+PP     K+N DAA   E  M  LG + RN +G+V VAA K+++ + +  IAE  A+  GL++      T ++VE+DC 
Subjt:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQ

Query:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD
        +  +       NK  + W   EI    +   S D
Subjt:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]2.9e-0832.09Show/hide
Query:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQ
        M+ K  +  SS+     +RW+PP     K+N DAA   E  M  LG + RN +G+V VAA K+++ + +  I E  A+  GL++      T ++VE+DC 
Subjt:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQ

Query:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD
        +  N       NK  + W   EI    +   S D
Subjt:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD

XP_040996092.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121242268 [Juglans microcarpa x Juglans regia]1.4e-1045.65Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKVS
        RWSPP+    KLN D A   E++ TSLG I RN  G V +A S+A  V+LE    E  A+L GL+L +++G + LV+ESDC   +  +NKV+
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKVS

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase2.7e-0736.36Show/hide
Query:  RNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN-KVSLIW
        R   W  P+   WK+N+DA+ S       LG++ R++EGK+ V+ ++ L    ++  AE+ AIL G +L +  G T  ++ESD  LAI+ IN K +++W
Subjt:  RNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN-KVSLIW

A0A1R3HQR7 Ribonuclease H8.3e-0943.82Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V  +  K +    +   A L+AI  GL+L  S G    V+ESDC LAI  IN
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN

A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)9.1e-0842.7Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK
        W PP+   +KLN+DAA  KE  +T LG I RN +G V  A +       +  IAE  AILEGLKL   +  +  ++ESD +  +NFI K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK

A0A6J1BQ49 uncharacterized protein LOC1110047869.1e-0845Show/hide
Query:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFI
        S + SS    + RW PP     K+NSDAAC    + T LG+I R+  G + VA S  L + L    AE+  ILE LKL  S   T LVVESDCQ AI  +
Subjt:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFI

A0A6J1DJL6 uncharacterized protein LOC1110217114.5e-0738.61Show/hide
Query:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN
        N + +  D N  W+PP+  + K+N D AC    S T +G++C+N +G++ VA  + LDV  E    E  AILEGL L   L    + V+SD Q +IN I+
Subjt:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTACGGTAGCTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGGTTTCTCTTATT
TGGGTTGCCCATGAGATTGCTCGATATGGGAAATCTGTAAATAGCCATGACGTTTGGGTAGTTGATCCGTTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGC
GAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAAAGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCA
AAGTTGGTCCAGACTTTTGCAAAATCTTTTGGAATGTCTACGTGCACAATGATGTGGATATTGTCCTTCCTGAACTCTCATTAAGTGAGTGGATCAAGGGAAAGGCTAGG
TTCACGTGGAAGAGTGCGGCTAGAACTATTCCTTTGGTCTCTTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTACGGTAGCTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGGTTTCTCTTATT
TGGGTTGCCCATGAGATTGCTCGATATGGGAAATCTGTAAATAGCCATGACGTTTGGGTAGTTGATCCGTTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGC
GAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAAAGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCA
AAGTTGGTCCAGACTTTTGCAAAATCTTTTGGAATGTCTACGTGCACAATGATGTGGATATTGTCCTTCCTGAACTCTCATTAAGTGAGTGGATCAAGGGAAAGGCTAGG
TTCACGTGGAAGAGTGCGGCTAGAACTATTCCTTTGGTCTCTTTGGATTGA
Protein sequenceShow/hide protein sequence
MRIKSNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKVSLI
WVAHEIARYGKSVNSHDVWVVDPLLPKRIKEKVPTGANKITAPKNMIQIFLHLLTKDGTKGAKQMGIPSQEPTKVGPDFCKIFWNVYVHNDVDIVLPELSLSEWIKGKAR
FTWKSAARTIPLVSLD