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Spg037264 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037264
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:22233620..22235479
RNA-Seq ExpressionSpg037264
SyntenySpg037264
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-2160Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++                   G    +  DDVCWLHA+FR + AGGPGGGVT
Subjt:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-2472.84Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
        L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + EDDVCWLHA+FR + AGGPGGGV
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-2160Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++                   G    +  DDVCWLHA+FR + AGGPGGGVT
Subjt:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]5.2e-2161.22Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        L TLSVLRDNDAVVEIELP+P TLPTSAE S S+SSTW+ELY ESVH+                  +G    +  DDVCWLHAIFR + AGGPGGGVT
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-2472.84Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
        L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + EDDVCWLHA+FR + AGGPGGGV
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.5e-2161.22Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        L TLSVLRDNDAVVEIELP+P TLPTSAE S S+SSTW+ELY ESVH+                  +G    +  DDVCWLHAIFR + AGGPGGGVT
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
A0A5A7TKT0 Reverse transcriptase1.5e-2160Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++                   G    +  DDVCWLHA+FR + AGGPGGGVT
Subjt:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
A0A5A7VMG9 Reverse transcriptase1.4e-2472.84Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
        L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + EDDVCWLHA+FR + AGGPGGGV
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
A0A5D3D150 Reverse transcriptase1.5e-2160Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
        SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++                   G    +  DDVCWLHA+FR + AGGPGGGVT
Subjt:  SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK-------------------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT
A0A5D3DX39 Reverse transcriptase1.4e-2472.84Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
        L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + EDDVCWLHA+FR + AGGPGGGV
Subjt:  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEEDDVCWLHAIFRTEFAGGPGGGV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCGTTCTGGGGTGTTCAAGTTGAATCAGAAGC
TCTATTTGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATTGAGCTCCCGGTGCCTGCTACACTGCCAACGTCTGCTGAAAGAT
CTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTAAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTTC
CGGACTGAGTTCGCAGGTGGTCCGGGAGGGGGTGTGACATTGGAACTCAAAGTTCGGACCAATGACAGTTCTTTAGGTGGTTTGGCTGACAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCGTTCTGGGGTGTTCAAGTTGAATCAGAAGC
TCTATTTGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATTGAGCTCCCGGTGCCTGCTACACTGCCAACGTCTGCTGAAAGAT
CTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTAAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTTC
CGGACTGAGTTCGCAGGTGGTCCGGGAGGGGGTGTGACATTGGAACTCAAAGTTCGGACCAATGACAGTTCTTTAGGTGGTTTGGCTGACAAATAG
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGYISLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVSLEEDDVCWLHAIF
RTEFAGGPGGGVTLELKVRTNDSSLGGLADK