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Spg037265 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037265
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:22606244..22608763
RNA-Seq ExpressionSpg037265
SyntenySpg037265
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-2357.85Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD
        RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTW                           FNVSVGST IVRGD
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGGV
        +VCWLHAVF AK AGGPGGGV
Subjt:  DVCWLHAVFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.6e-2257.98Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVT
        WLHAVFRAK  GGPGGGVT
Subjt:  WLHAVFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-2255.28Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVTEMK
        CWLHAVFRAK  GGPGGGVT ++
Subjt:  CWLHAVFRAKLAGGPGGGVTEMK

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.7e-2458.2Show/hide
Query:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD
        +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGD
Subjt:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGGVT
        DVCWLHAVFRAK  GGPGGGVT
Subjt:  DVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.0e-2255.28Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVTEMK
        CWLHAVFRAK  GGPGGGVT ++
Subjt:  CWLHAVFRAKLAGGPGGGVTEMK

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.3e-2357.85Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD
        RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTW                           FNVSVGST IVRGD
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGGV
        +VCWLHAVF AK AGGPGGGV
Subjt:  DVCWLHAVFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein1.2e-2257.98Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVT
        WLHAVFRAK  GGPGGGVT
Subjt:  WLHAVFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase9.5e-2355.28Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVTEMK
        CWLHAVFRAK  GGPGGGVT ++
Subjt:  CWLHAVFRAKLAGGPGGGVTEMK

A0A5D3CJX3 CCHC-type domain-containing protein2.3e-2458.2Show/hide
Query:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD
        +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGD
Subjt:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGGVT
        DVCWLHAVFRAK  GGPGGGVT
Subjt:  DVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein9.5e-2355.28Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVTEMK
        CWLHAVFRAK  GGPGGGVT ++
Subjt:  CWLHAVFRAKLAGGPGGGVTEMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTA
AGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGAGATGAAGCCATTAGAGAGTTCTAGCTCTCTATCAGCAAGTATTACTCATGTCTTTCCTGAGTTCCCTCAATCGCTG
CTGCCTCAAGAAGAAAAGGATTCTGATGATGAAGAAAAGGATTCTGATGAAGATGAAGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTA
AGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGAGATGAAGCCATTAGAGAGTTCTAGCTCTCTATCAGCAAGTATTACTCATGTCTTTCCTGAGTTCCCTCAATCGCTG
CTGCCTCAAGAAGAAAAGGATTCTGATGATGAAGAAAAGGATTCTGATGAAGATGAAGAAGATTAA
Protein sequenceShow/hide protein sequence
MGWHFFRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTEMKPLESSSSLSASITHVFPEFPQSL
LPQEEKDSDDEEKDSDEDEED