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Spg037269 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037269
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold3:22350655..22359313
RNA-Seq ExpressionSpg037269
SyntenySpg037269
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.3e-4163.75Show/hide
Query:  KAKASSSKGKSPSSS--SAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG  PSSS  S P PMSA QY MDLGFT VTRSR+R      GS TESST PPRPS NL+RPSGG++Q RPP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGKSPSSS--SAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRI
        T +KRFVPRPEIK YFQKS+V+ +PIIEPE+Q L LEE +S ++P  FNF+PEDL+K +I
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRI

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.1e-4064.33Show/hide
Query:  KAKASSSKGK--SPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG   S SS+SAP PMSADQYAMDLGFT VTRSR+R  G   G  TESST PPRPSANL+RP G +VQ +PP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGK--SPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRK
        TP+KRFVPRP+IK YFQKS+V+ +P IE E+Q L LEE +S ++P  FNF+PEDLRK
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRK

KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.0e-4252.5Show/hide
Query:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF
        S+ + PS SSAP PMSA+ YAMDL F  V+R R  S        ++SS+ PP PS  L+RPSG     +   SP      S    +PSSYSQ V P K F
Subjt:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF

Query:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI
         PRP I  YF K+ ++ +  IEPEF G +++E  S ++P GFNF+PEDL KTR FYE+ILVD+KSAEITH+PDKNDPSK  YSKL+IF+ L P++W QG+
Subjt:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.3e-4665.29Show/hide
Query:  KAKASSSKGKSP--SSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG  P  SS+SAP P+SADQYAMDLGFT VTR  +RS G   GS TESST PPRPS NL+RPS G+VQ RPP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGKSP--SSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAK
        TP+KRFVPRPEIK YFQK +V+ +PIIE E+Q L  EET+S ++P  FNF+ EDLRKTR FYEFIL D K
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAK

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.1e-4252.5Show/hide
Query:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF
        S+ + PS SSAP PMSA+ YAMDL F  V+R R  S        ++SS+ PP PS  L+RPSG     +   SP      S    +PSSYSQ V P K F
Subjt:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF

Query:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI
         PRP I  YF K+ ++ +  IEPEF G +++E  S ++P GFNF+PEDL KTR FYE+ILVD+KSAEITH+PDKNDPSK  YSKL+IF+ L P++W QG+
Subjt:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI

TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf29.5e-4352.5Show/hide
Query:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF
        S+ + PS SSAP PMSA+ YAMDL F  V+R R  S        ++SS+ PP PS  L+RPSG     +   SP      S    +PSSYSQ V P K F
Subjt:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF

Query:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI
         PRP I  YF K+ ++ +  IEPEF G +++E  S ++P GFNF+PEDL KTR FYE+ILVD+KSAEITH+PDKNDPSK  YSKL+IF+ L P++W QG+
Subjt:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI

A0A5A7TM80 Putative Retrotransposon protein6.3e-4765.29Show/hide
Query:  KAKASSSKGKSP--SSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG  P  SS+SAP P+SADQYAMDLGFT VTR  +RS G   GS TESST PPRPS NL+RPS G+VQ RPP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGKSP--SSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAK
        TP+KRFVPRPEIK YFQK +V+ +PIIE E+Q L  EET+S ++P  FNF+ EDLRKTR FYEFIL D K
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAK

A0A5D3DX32 Retrotransposable element Tf25.6e-4352.5Show/hide
Query:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF
        S+ + PS SSAP PMSA+ YAMDL F  V+R R  S        ++SS+ PP PS  L+RPSG     +   SP      S    +PSSYSQ V P K F
Subjt:  SKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSST--PSPSSYSQAVTPEKRF

Query:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI
         PRP I  YF K+ ++ +  IEPEF G +++E  S ++P GFNF+PEDL KTR FYE+ILVD+KSAEITH+PDKNDPSK  YSKL+IF+ L P++W QG+
Subjt:  VPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGI

A0A5D3E4J4 Uncharacterized protein5.2e-4164.33Show/hide
Query:  KAKASSSKGK--SPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG   S SS+SAP PMSADQYAMDLGFT VTRSR+R  G   G  TESST PPRPSANL+RP G +VQ +PP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGK--SPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRK
        TP+KRFVPRP+IK YFQKS+V+ +P IE E+Q L LEE +S ++P  FNF+PEDLRK
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRK

E5GCE6 Uncharacterized protein6.1e-4263.75Show/hide
Query:  KAKASSSKGKSPSSS--SAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV
        +  ++SSKG  PSSS  S P PMSA QY MDLGFT VTRSR+R      GS TESST PPRPS NL+RPSGG++Q RPP SP     SSTP P++YSQAV
Subjt:  KAKASSSKGKSPSSS--SAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAV

Query:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRI
        T +KRFVPRPEIK YFQKS+V+ +PIIEPE+Q L LEE +S ++P  FNF+PEDL+K +I
Subjt:  TPEKRFVPRPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGACAGAAAGGCGAAAGCCTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAGCACCTCCACCGATGAGTGCTGATCAATACGCTATGGATCTTGGGTTTAC
TCCGGTAACCCGTTCTAGAGCAAGGTCCGTCGGTACACAACCCGGATCGACCACGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAATTTGGTTCGTCCTTCAGGCG
GAATCGTTCAAAGGAGACCTCCTGTCTCACCTGATATAAGGATAGGGTCATCAACCCCATCACCCTCTTCATATTCTCAGGCGGTTACTCCTGAAAAGAGGTTTGTACCT
CGTCCTGAAATTAAAGTTTACTTTCAAAAATCACTGGTTATCAATGAACCCATCATTGAACCAGAATTCCAAGGTCTCAACCTTGAAGAGACCATTTCAAACATGTATCC
TTCAGGCTTCAACTTTATGCCAGAAGATTTGAGAAAAACTCGAATTTTCTATGAGTTTATTCTTGTTGACGCCAAGTCAGCGGAAATAACTCATATTCCAGACAAAAATG
ATCCTTCAAAAACTACATATTCAAAGCTTAAAATATTTAAAGCCTTGAATCCAACCCATTGGAACCAAGGTATCATTCGAAATCCTTCGAACTTCTTGCCATCCTCTTGT
ACTATCGATCCTGATTCTGATTTTCTCTTTGCGGTTAGAGCATCGAGCGATTGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCA
TGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTGTCAACCTCTTGTGTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGAAAGATAAAGGGTAGCAGAG
AAGCTCAAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGAGAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGA
AAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAGGATATACTTGGAGATGAAGAATCAGAAGAAAACGGTGGGAAAAAGATTGAAGTTG
AAGACATCAGTCAACCCTTGAAAAGACGAAGGATAAAACCATATTGGGATAAAGGCTTCAAGGATGAAGAAGCCCATGTCTCCGTGATTGATTTGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGACAGAAAGGCGAAAGCCTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAGCACCTCCACCGATGAGTGCTGATCAATACGCTATGGATCTTGGGTTTAC
TCCGGTAACCCGTTCTAGAGCAAGGTCCGTCGGTACACAACCCGGATCGACCACGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAATTTGGTTCGTCCTTCAGGCG
GAATCGTTCAAAGGAGACCTCCTGTCTCACCTGATATAAGGATAGGGTCATCAACCCCATCACCCTCTTCATATTCTCAGGCGGTTACTCCTGAAAAGAGGTTTGTACCT
CGTCCTGAAATTAAAGTTTACTTTCAAAAATCACTGGTTATCAATGAACCCATCATTGAACCAGAATTCCAAGGTCTCAACCTTGAAGAGACCATTTCAAACATGTATCC
TTCAGGCTTCAACTTTATGCCAGAAGATTTGAGAAAAACTCGAATTTTCTATGAGTTTATTCTTGTTGACGCCAAGTCAGCGGAAATAACTCATATTCCAGACAAAAATG
ATCCTTCAAAAACTACATATTCAAAGCTTAAAATATTTAAAGCCTTGAATCCAACCCATTGGAACCAAGGTATCATTCGAAATCCTTCGAACTTCTTGCCATCCTCTTGT
ACTATCGATCCTGATTCTGATTTTCTCTTTGCGGTTAGAGCATCGAGCGATTGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCA
TGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTGTCAACCTCTTGTGTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGAAAGATAAAGGGTAGCAGAG
AAGCTCAAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGAGAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGA
AAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAGGATATACTTGGAGATGAAGAATCAGAAGAAAACGGTGGGAAAAAGATTGAAGTTG
AAGACATCAGTCAACCCTTGAAAAGACGAAGGATAAAACCATATTGGGATAAAGGCTTCAAGGATGAAGAAGCCCATGTCTCCGTGATTGATTTGGTATGA
Protein sequenceShow/hide protein sequence
MSDRKAKASSSKGKSPSSSSAPPPMSADQYAMDLGFTPVTRSRARSVGTQPGSTTESSTPPPRPSANLVRPSGGIVQRRPPVSPDIRIGSSTPSPSSYSQAVTPEKRFVP
RPEIKVYFQKSLVINEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLRKTRIFYEFILVDAKSAEITHIPDKNDPSKTTYSKLKIFKALNPTHWNQGIIRNPSNFLPSSC
TIDPDSDFLFAVRASSDWKKKKKNFVVLRLKKIGKAHAKPATAESGFNLSTSCVLFGLSYTEGTKRRKIKGSREAQICVVCVRGVSEKIGWESRFHFFRPRGNRSSLQTR
KLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSKDILGDEESEENGGKKIEVEDISQPLKRRRIKPYWDKGFKDEEAHVSVIDLV