; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037275 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037275
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:22472405..22477412
RNA-Seq ExpressionSpg037275
SyntenySpg037275
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]9.4e-3248.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        STGFSSK GG LVFS+ LSIL              K N+  ++ +VW                  P G+  SLQTG+LDKT                 VE
Subjt:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCRLHAVF
        IELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  IS I MFIRF+VS+GSTGIVRG+DV   H VF
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCRLHAVF

Query:  RAKLAGGPGGG
        RAK AGG GGG
Subjt:  RAKLAGGPGGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.2e-2545.19Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT---------------VEIE
        STGFSSK GG LVFSD LSIL            +I  + +    V+ +R     I          P G+R SLQT +LDKT               V IE
Subjt:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT---------------VEIE

Query:  LPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        LPVPD LPTSAESS S+SSTWLELY ESV                           +E F S     M  + + F+VS+GSTGIVRGDDVC LHAVFRAK
Subjt:  LPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-2645.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        TGFSSK GG LVFSD LSIL              K N++     ++L   SG+ G W+         G+RSSLQ+G+LD T                 VE
Subjt:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        IELPVPDTLPTSAESS S+SSTWLELY ESV  +                        + C+ +   M  + + FSV +GSTGIVRGDDVC LHAVFRAK
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]8.2e-2838.8Show/hide
Query:  IHSFPDPRVSREHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRVWVQTSTGFSSKAGGSLVFSDVLSILGCTSCIRSSIWR-----------KIKGNR
        +H FP      EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCR+W   STGFSSK  G LVFSD LSIL      +   W              +GNR
Subjt:  IHSFPDPRVSREHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRVWVQTSTGFSSKAGGSLVFSDVLSILGCTSCIRSSIWR-----------KIKGNR

Query:  EA---------RICVVWLRGI-SGQIGWEYRFHFFRPIGSRSSLQ----------------------------------TGK----LDKTVEIELPVPDT
         +          I + ++  I S ++          P+ + S L+                                  TG+    +D+++EIEL VPDT
Subjt:  EA---------RICVVWLRGI-SGQIGWEYRFHFFRPIGSRSSLQ----------------------------------TGK----LDKTVEIELPVPDT

Query:  LPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFI--SMISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAKLAGGPGGG
        LPTSAESS S+SSTWLE                               F  E F   S +    R    + S GIVR +DVC LHAVFRAK+AGG GGG
Subjt:  LPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFI--SMISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAKLAGGPGGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-2645.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        TGFSSK GG LVFSD LSIL              K N++     ++L   SG+ G W+         G+RSSLQ+G+LD T                 VE
Subjt:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        IELPVPDTLPTSAESS S+SSTWLELY ESV  +                        + C+ +   M  + + FSV +GSTGIVRGDDVC LHAVFRAK
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7UEC1 Uncharacterized protein4.5e-3248.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        STGFSSK GG LVFS+ LSIL              K N+  ++ +VW                  P G+  SLQTG+LDKT                 VE
Subjt:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCRLHAVF
        IELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  IS I MFIRF+VS+GSTGIVRG+DV   H VF
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCRLHAVF

Query:  RAKLAGGPGGG
        RAK AGG GGG
Subjt:  RAKLAGGPGGG

A0A5A7UT17 CCHC-type domain-containing protein1.1e-2545.19Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT---------------VEIE
        STGFSSK GG LVFSD LSIL            +I  + +    V+ +R     I          P G+R SLQT +LDKT               V IE
Subjt:  STGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKT---------------VEIE

Query:  LPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        LPVPD LPTSAESS S+SSTWLELY ESV                           +E F S     M  + + F+VS+GSTGIVRGDDVC LHAVFRAK
Subjt:  LPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

A0A5A7V9N3 Reverse transcriptase5.7e-2745.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        TGFSSK GG LVFSD LSIL              K N++     ++L   SG+ G W+         G+RSSLQ+G+LD T                 VE
Subjt:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        IELPVPDTLPTSAESS S+SSTWLELY ESV  +                        + C+ +   M  + + FSV +GSTGIVRGDDVC LHAVFRAK
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

A0A5D3CAC6 Uncharacterized protein4.0e-2838.8Show/hide
Query:  IHSFPDPRVSREHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRVWVQTSTGFSSKAGGSLVFSDVLSILGCTSCIRSSIWR-----------KIKGNR
        +H FP      EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCR+W   STGFSSK  G LVFSD LSIL      +   W              +GNR
Subjt:  IHSFPDPRVSREHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRVWVQTSTGFSSKAGGSLVFSDVLSILGCTSCIRSSIWR-----------KIKGNR

Query:  EA---------RICVVWLRGI-SGQIGWEYRFHFFRPIGSRSSLQ----------------------------------TGK----LDKTVEIELPVPDT
         +          I + ++  I S ++          P+ + S L+                                  TG+    +D+++EIEL VPDT
Subjt:  EA---------RICVVWLRGI-SGQIGWEYRFHFFRPIGSRSSLQ----------------------------------TGK----LDKTVEIELPVPDT

Query:  LPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFI--SMISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAKLAGGPGGG
        LPTSAESS S+SSTWLE                               F  E F   S +    R    + S GIVR +DVC LHAVFRAK+AGG GGG
Subjt:  LPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFI--SMISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAKLAGGPGGG

A0A5D3DSY7 Putative Retrotransposon protein5.7e-2745.67Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE
        TGFSSK GG LVFSD LSIL              K N++     ++L   SG+ G W+         G+RSSLQ+G+LD T                 VE
Subjt:  TGFSSKAGGSLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIG-WEYRFHFFRPIGSRSSLQTGKLDKT-----------------VE

Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK
        IELPVPDTLPTSAESS S+SSTWLELY ESV  +                        + C+ +   M  + + FSV +GSTGIVRGDDVC LHAVFRAK
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAK

Query:  LAGGPGGG
          GGPGGG
Subjt:  LAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCGCATTTCTGGGAAGGCAAAATGAAATGCAACCGCATTTCTGGAAAAACCGAGACCGTTCTGAGTCATCGGCAGATCGTTGTTGACGAGTCTTCTTCTCACCT
AACCGGCCGTGACGACGCACCAATAGTCACACAACATGGAATTCACTCATTTCCCGACCCTAGGGTAAGTAGAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAG
AAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAGTCTGGGTGCAAACTAGCACAGGATTTTCGAGCAAAGCAGGAGGA
TCTCTGGTGTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTG
GCTTCGGGGCATTTCTGGACAAATTGGTTGGGAATATCGTTTTCATTTCTTCAGGCCAATAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTA
TGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGT
TTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTCGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGCTGGACGGACCCCTT
TCTTGATGAACAAGTCGGTAGCGTCGCGACGCTGTGACGTCACAGGTTTTTTTGCGCAGAAGTTGGTGCAGCGTCGCGACGCTGTCACGATTCCAGGTCGTTCTTTACTA
CCTGCCAAGCGTCTCGACGCTACGCCTTCTAGAAGCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGACCGCATTTCTGGGAAGGCAAAATGAAATGCAACCGCATTTCTGGAAAAACCGAGACCGTTCTGAGTCATCGGCAGATCGTTGTTGACGAGTCTTCTTCTCACCT
AACCGGCCGTGACGACGCACCAATAGTCACACAACATGGAATTCACTCATTTCCCGACCCTAGGGTAAGTAGAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAG
AAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAGTCTGGGTGCAAACTAGCACAGGATTTTCGAGCAAAGCAGGAGGA
TCTCTGGTGTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTG
GCTTCGGGGCATTTCTGGACAAATTGGTTGGGAATATCGTTTTCATTTCTTCAGGCCAATAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTA
TGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGT
TTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTCGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGCTGGACGGACCCCTT
TCTTGATGAACAAGTCGGTAGCGTCGCGACGCTGTGACGTCACAGGTTTTTTTGCGCAGAAGTTGGTGCAGCGTCGCGACGCTGTCACGATTCCAGGTCGTTCTTTACTA
CCTGCCAAGCGTCTCGACGCTACGCCTTCTAGAAGCCCATAG
Protein sequenceShow/hide protein sequence
MRPHFWEGKMKCNRISGKTETVLSHRQIVVDESSSHLTGRDDAPIVTQHGIHSFPDPRVSREHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRVWVQTSTGFSSKAGG
SLVFSDVLSILGCTSCIRSSIWRKIKGNREARICVVWLRGISGQIGWEYRFHFFRPIGSRSSLQTGKLDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRL
CQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCRLHAVFRAKLAGGPGGGAGRTPFLMNKSVASRRCDVTGFFAQKLVQRRDAVTIPGRSLL
PAKRLDATPSRSP