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Spg037280 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037280
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:22810102..22811918
RNA-Seq ExpressionSpg037280
SyntenySpg037280
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.7e-1163.49Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ
        VEIELPV DTLP SAESS ++S S         + EDDV WLH +F  K AGGPGGGVTTWYQ
Subjt:  VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-1147.17Show/hide
Query:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG
        C  G   S  + F   L VEIELPVPD LPTSAESSR++SS+  +   E   V +                        DDV WLHAIF  K AGGPGGG
Subjt:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG

Query:  VTTWYQ
        VTTWYQ
Subjt:  VTTWYQ

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.1e-0963.33Show/hide
Query:  EIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTW
        EIELPVPDTL TSAESS ++S S         +  DDV WLHAIF  K+ GGPGGGVTTW
Subjt:  EIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTW

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-1147.17Show/hide
Query:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG
        C  G   S  + F   L VEIELPVPD LPTSAESSR++SS+  +   E   V +                        DDV WLHAIF  K AGGPGGG
Subjt:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG

Query:  VTTWYQ
        VTTWYQ
Subjt:  VTTWYQ

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.3e-1155.84Show/hide
Query:  SFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ
        SF +LS   +    VEIELPV DTLPTSAESS ++S S         +  DDV WLH++F  K A GPGGGVTTWYQ
Subjt:  SFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.1e-1147.17Show/hide
Query:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG
        C  G   S  + F   L VEIELPVPD LPTSAESSR++SS+  +   E   V +                        DDV WLHAIF  K AGGPGGG
Subjt:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG

Query:  VTTWYQ
        VTTWYQ
Subjt:  VTTWYQ

A0A5D3BNX1 Zf-CCHC domain-containing protein2.0e-0963.33Show/hide
Query:  EIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTW
        EIELPVPDTL TSAESS ++S S         +  DDV WLHAIF  K+ GGPGGGVTTW
Subjt:  EIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTW

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.7e-1163.49Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ
        VEIELPV DTLP SAESS ++S S         + EDDV WLH +F  K AGGPGGGVTTWYQ
Subjt:  VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ

A0A5D3BTP3 Reverse transcriptase2.1e-1147.17Show/hide
Query:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG
        C  G   S  + F   L VEIELPVPD LPTSAESSR++SS+  +   E   V +                        DDV WLHAIF  K AGGPGGG
Subjt:  CFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFLTKLAGGPGGG

Query:  VTTWYQ
        VTTWYQ
Subjt:  VTTWYQ

A0A5D3CU23 Retrotrans_gag domain-containing protein1.6e-1155.84Show/hide
Query:  SFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ
        SF +LS   +    VEIELPV DTLPTSAESS ++S S         +  DDV WLH++F  K A GPGGGVTTWYQ
Subjt:  SFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKLAGGPGGGVTTWYQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCACAGCGTCGCGACGCTGTGCCGTATAGCGTCGTGACGCTACCCCCTTTTCGAGCCTATAAAAGGCGCCCCTGGGTGCCTCATTTTACCATCAATCATCATAT
TCTTCCATTCCTTTCTTGCTTTCTTGGCTCCTTTGGGAGCCTCTCTCAAGGCTTTGAAGCCATTTTGAGAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGT
CTGCTGAAAGTTCCAGAACAAGCTCTAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCTGACTAAGCTA
GCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGTGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTCACAGCGTCGCGACGCTGTGCCGTATAGCGTCGTGACGCTACCCCCTTTTCGAGCCTATAAAAGGCGCCCCTGGGTGCCTCATTTTACCATCAATCATCATAT
TCTTCCATTCCTTTCTTGCTTTCTTGGCTCCTTTGGGAGCCTCTCTCAAGGCTTTGAAGCCATTTTGAGAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGT
CTGCTGAAAGTTCCAGAACAAGCTCTAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCTGACTAAGCTA
GCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGTGCAGTTAG
Protein sequenceShow/hide protein sequence
MTSQRRDAVPYSVVTLPPFRAYKRRPWVPHFTINHHILPFLSCFLGSFGSLSQGFEAILRVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFLTKL
AGGPGGGVTTWYQCS