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Spg037282 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037282
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:22598552..22600529
RNA-Seq ExpressionSpg037282
SyntenySpg037282
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.5e-2249.32Show/hide
Query:  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV-----
        CQPL+     +  +E R       ES    +  G  +     LS  PRGNR +L TG+LDKTVEIELP+PDTLPTSAESS+S+SSTW  +   SV     
Subjt:  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV-----

Query:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGCPGGGV
                        GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGCPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.2e-2353.68Show/hide
Query:  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESSRSSSSTW---------------------------FNVSVG
        + NL  L S  PRGNR SLQT ELDKT               V IELP+PD LPTSAESS S+SSTW                           FNVSVG
Subjt:  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESSRSSSSTW---------------------------FNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS
        STGIVRGDDVCWLHAVFRAK  G PGGGVT+W  S+
Subjt:  STGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]7.8e-2252.32Show/hide
Query:  MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPLPDT
        MQSQPLQ+L +T    +F S  +T+  S+   G  V S+AL  +     N       PRGNR SLQTG+LDKT                 VEIELP+PDT
Subjt:  MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPLPDT

Query:  LPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT
        LPTSAES  S+S         STGIVRGDDVCWLHAVFRAK AG PGGGVT
Subjt:  LPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2143.96Show/hide
Query:  MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPL
        MQSQPLQ+L +T      +S  +G      ++ +   V   ++ L+  +  G   +     RGNRSSLQ+GELD T                 VEIELP+
Subjt:  MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPL

Query:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTS
        PDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDVCWLHAVFRAK  G PGGGVT+
Subjt:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.1e-2648.13Show/hide
Query:  MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLSTTPRGNRSSLQTGELDKTV---------------EIELPL
        MQSQPLQ+L +T     V +S+   +  +S  F     G  V S+AL  +  + +  +L   PRGNR SLQTGELDKTV                IELP+
Subjt:  MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLSTTPRGNRSSLQTGELDKTV---------------EIELPL

Query:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS
        PDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  G PGGGVT+W  S+
Subjt:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.7e-2249.32Show/hide
Query:  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV-----
        CQPL+     +  +E R       ES    +  G  +     LS  PRGNR +L TG+LDKTVEIELP+PDTLPTSAESS+S+SSTW  +   SV     
Subjt:  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV-----

Query:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGCPGGGV
                        GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  ----------------GSTGIVRGDDVCWLHAVFRAKLAGCPGGGV

A0A5A7UT17 CCHC-type domain-containing protein4.5e-2353.68Show/hide
Query:  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESSRSSSSTW---------------------------FNVSVG
        + NL  L S  PRGNR SLQT ELDKT               V IELP+PD LPTSAESS S+SSTW                           FNVSVG
Subjt:  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESSRSSSSTW---------------------------FNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS
        STGIVRGDDVCWLHAVFRAK  G PGGGVT+W  S+
Subjt:  STGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS

A0A5A7V9N3 Reverse transcriptase4.9e-2243.96Show/hide
Query:  MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPL
        MQSQPLQ+L +T      +S  +G      ++ +   V   ++ L+  +  G   +     RGNRSSLQ+GELD T                 VEIELP+
Subjt:  MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPL

Query:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTS
        PDTLPTSAESS S+SSTW                           F+V VGSTGIVRGDDVCWLHAVFRAK  G PGGGVT+
Subjt:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTS

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.8e-2252.32Show/hide
Query:  MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPLPDT
        MQSQPLQ+L +T    +F S  +T+  S+   G  V S+AL  +     N       PRGNR SLQTG+LDKT                 VEIELP+PDT
Subjt:  MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRGNRSSLQTGELDKT-----------------VEIELPLPDT

Query:  LPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT
        LPTSAES  S+S         STGIVRGDDVCWLHAVFRAK AG PGGGVT
Subjt:  LPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.5e-2648.13Show/hide
Query:  MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLSTTPRGNRSSLQTGELDKTV---------------EIELPL
        MQSQPLQ+L +T     V +S+   +  +S  F     G  V S+AL  +  + +  +L   PRGNR SLQTGELDKTV                IELP+
Subjt:  MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLSTTPRGNRSSLQTGELDKTV---------------EIELPL

Query:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS
        PDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK  G PGGGVT+W  S+
Subjt:  PDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGA
ATCAGAAGCTCTATTTGCTATGGTTGGAAATCTTATTCAATTATCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCG
AGCTCCCGCTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGAT
GTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTTGTCCGGGAGGGGGTGTGACATCTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGA
ATCAGAAGCTCTATTTGCTATGGTTGGAAATCTTATTCAATTATCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCG
AGCTCCCGCTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGAT
GTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTTGTCCGGGAGGGGGTGTGACATCTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLIQLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDD
VCWLHAVFRAKLAGCPGGGVTSWYQSS