; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037287 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037287
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:22759076..22763761
RNA-Seq ExpressionSpg037287
SyntenySpg037287
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1458.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS
        LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+E                         DDV WLHAIFR + AGGPGGGV+
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1346.9Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------------DDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKV
        +VEIELPVPDTLPTSAES  S+SSTW+ELY ESVH+E                           DDV WLHA+FR + AGGPGGGV+ Y   +  S+   
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------------DDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKV

Query:  EGPHRDVIISSDE
            R  ++SS E
Subjt:  EGPHRDVIISSDE

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1658.43Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+          EDDV WLHA+FR + AGGPGGGV       PP + K   P++D
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1458.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS
        LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+E                         DDV WLHAIFR + AGGPGGGV+
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1658.43Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+          EDDV WLHA+FR + AGGPGGGV       PP + K   P++D
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.5e-1558.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS
        LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+E                         DDV WLHAIFR + AGGPGGGV+
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS

A0A5A7TKT0 Reverse transcriptase5.5e-1446.9Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------------DDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKV
        +VEIELPVPDTLPTSAES  S+SSTW+ELY ESVH+E                           DDV WLHA+FR + AGGPGGGV+ Y   +  S+   
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------------DDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKV

Query:  EGPHRDVIISSDE
            R  ++SS E
Subjt:  EGPHRDVIISSDE

A0A5A7VMG9 Reverse transcriptase2.0e-1658.43Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+          EDDV WLHA+FR + AGGPGGGV       PP + K   P++D
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD

A0A5D3BTP3 Reverse transcriptase6.5e-1558.82Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS
        LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+E                         DDV WLHAIFR + AGGPGGGV+
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE-------------------------DDVRWLHAIFRTELAGGPGGGVS

A0A5D3DX39 Reverse transcriptase2.0e-1658.43Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+          EDDV WLHA+FR + AGGPGGGV       PP + K   P++D
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI----------EDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATAT
TGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTAGCAGGTGGTCCGGGAGGGGGTGTGTCAGGTTACGCTGACGATGCTCCTCCATCTTCGCCGAAGG
TGGAAGGACCGCATAGGGACGTCATTATCTCATCGGATGAAGAGCACGACAATCGGCAGAACGATGACCGCATAGAGGAAGACGAACCAGAGGTCATTGATAGGGAAGAA
ACCATCGAAAGCTTGGAAGCCCCGCTCACCGATACGAATACCACTGAAGTTCTCAATGTAACACCACTGGACATCTCCACTTTCAACATACAGTCAGTAAACCTCCAACC
CGCACAAAATATCCTTGGCTCACGAAACCTAACTCCATTTTCCTCTCCTTTCCCATCTGTTTCCATCCTTCCACCTCCTAACTCTTCCACTGCCCTGGCCCTAAACACCA
CCCCTTCCTCTTCCTCCACCTCCCCAACCGTTTCCATTTCCCTCCCACCATCTACCTCCACAAGCCCTGCTCTCCCGCAGTTCTCCGAGCAGCAGATTGCCGCATGGAAC
TCCCTGCTGGGGGAGTTGGGCGAAGAAGGCGAAAGAATCCGCCAGCGTGAAGAAAGAGAGCGCACCATGACAAAGGAAACTGGGCGCAAGGCTGCCGCAGAAGAAAACGC
AGCCAAAGAGAGAGAAAGCTCTAGCAAGCAGGCAGAAGACCCGACTGCTGCAGACATCGCTGCAACCAACTTAGCAGTCATTGCGGCGGCCATGGAAGTTGAAATTTCAG
AACCTGAGGATGAACTTCCCCTTACCCGTCGCCGCAACATCCAGTCAACTGGGGTAGTCATCCGAGAACCTTCGGAAAGACCTGCGGTGGCCCTGAGTAAAAAAAGGAAA
GCGCCCACCGCATCCAAGGGCAAGGAAAAACTGGGTGCATCTAAAGAGAAGGAAGGCAACAACTGGGGCAAATTCCAAGAAGATAGAGGCTTCAGCTGCGCCCTGCCACA
ATCAATGACCGAGCAGATCACCCAGCGCAGGTGGGAGGCAGTCTGTGAAAATCCTCGCAATTATGCCCCTGCGCTGCTGCGGGATATCCCGAACGCAGAAGGGAATGCAC
TCCTTGACTGCCTCGACAACGATTTCTTAAAAGCAGTATTGAATGCGGTGGCCAGACCTGGGGCCACATGGGTTGGGCAAGGAGCTGCACGGACCCTCAAATCGCAGCTG
CTAGACTTCAAGGCGACCTGTTGGATGCATTGGGTCAAGAACCGCATCATGCCCACAACGCATGATGCTACACTAACCTTGCAACGGGTAATCTTAGTTTATTGCATTAT
GCGAGGAAGCCCTATCGACTTGGGCCAAATCCTCGTCGAAACATTGTGCCAAACCGCCGCAAAACCTAAAGGCGCAATGTTTTGCCCTTGTCTTGTCACCCGTTTGTGTC
GCGCTTCCGCAACCACAGCACCAGCATCCCACACCACTAAGCCCTCGCATGCGCCTGAGCCACAAAAGAATAAGAGACGCAAGCAGACTGGGGGCAGATATCCACCACCA
GCTGCAAGGATCCCTCAATCTACTAAATTAGCGCAGGAAAGCACTATCTGCGTCCAACCTCAGGGATCCTTGCCGCAATCGCAAGAAAACTTGCCTCCACCTCCACCACC
ATCACCACCCACTGATTTGAACCCACCTTCACCGCAGCCCACTGAAGACTTGCGACCGGAGGAGGTTTTCGAAGAACCTCTACCTAGTCCTCCTCGCAATAATGAAGTTC
CTGCTCCAACGGCAACGCCGCACGAAACAGTTTCTGAGACCACAAGACAGGATGTGCCTGATCTAACCCTTGATGTAGACGAAGCTCTGATCTTTTCCCAGATGCGGCAG
ATACTTCAAGAAGTTATTCAGCCCCTGAAACAGCAGCAAGAAAGGTTGTGCCAACAGCAGGAGTTGCTGCGCAAACAACAGTTCGAATTATCGCAAAAGGTCAACGACTT
AGTCCTTTTCCTCATGCGATGGACTGAAAGCTTTGGTCGCTTGCATGTCAGGCCCAATTTGTTTGCGCGGCCAGCTGGACAACAAAGACCTCCAGGCACAGGCCCGTCTC
CAGTGCGTGGAACCATGCCTCCACCTGCGCCAAGGGACCCAAGAGCACCTCCACCGCCACCACCGCAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATAT
TGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTAGCAGGTGGTCCGGGAGGGGGTGTGTCAGGTTACGCTGACGATGCTCCTCCATCTTCGCCGAAGG
TGGAAGGACCGCATAGGGACGTCATTATCTCATCGGATGAAGAGCACGACAATCGGCAGAACGATGACCGCATAGAGGAAGACGAACCAGAGGTCATTGATAGGGAAGAA
ACCATCGAAAGCTTGGAAGCCCCGCTCACCGATACGAATACCACTGAAGTTCTCAATGTAACACCACTGGACATCTCCACTTTCAACATACAGTCAGTAAACCTCCAACC
CGCACAAAATATCCTTGGCTCACGAAACCTAACTCCATTTTCCTCTCCTTTCCCATCTGTTTCCATCCTTCCACCTCCTAACTCTTCCACTGCCCTGGCCCTAAACACCA
CCCCTTCCTCTTCCTCCACCTCCCCAACCGTTTCCATTTCCCTCCCACCATCTACCTCCACAAGCCCTGCTCTCCCGCAGTTCTCCGAGCAGCAGATTGCCGCATGGAAC
TCCCTGCTGGGGGAGTTGGGCGAAGAAGGCGAAAGAATCCGCCAGCGTGAAGAAAGAGAGCGCACCATGACAAAGGAAACTGGGCGCAAGGCTGCCGCAGAAGAAAACGC
AGCCAAAGAGAGAGAAAGCTCTAGCAAGCAGGCAGAAGACCCGACTGCTGCAGACATCGCTGCAACCAACTTAGCAGTCATTGCGGCGGCCATGGAAGTTGAAATTTCAG
AACCTGAGGATGAACTTCCCCTTACCCGTCGCCGCAACATCCAGTCAACTGGGGTAGTCATCCGAGAACCTTCGGAAAGACCTGCGGTGGCCCTGAGTAAAAAAAGGAAA
GCGCCCACCGCATCCAAGGGCAAGGAAAAACTGGGTGCATCTAAAGAGAAGGAAGGCAACAACTGGGGCAAATTCCAAGAAGATAGAGGCTTCAGCTGCGCCCTGCCACA
ATCAATGACCGAGCAGATCACCCAGCGCAGGTGGGAGGCAGTCTGTGAAAATCCTCGCAATTATGCCCCTGCGCTGCTGCGGGATATCCCGAACGCAGAAGGGAATGCAC
TCCTTGACTGCCTCGACAACGATTTCTTAAAAGCAGTATTGAATGCGGTGGCCAGACCTGGGGCCACATGGGTTGGGCAAGGAGCTGCACGGACCCTCAAATCGCAGCTG
CTAGACTTCAAGGCGACCTGTTGGATGCATTGGGTCAAGAACCGCATCATGCCCACAACGCATGATGCTACACTAACCTTGCAACGGGTAATCTTAGTTTATTGCATTAT
GCGAGGAAGCCCTATCGACTTGGGCCAAATCCTCGTCGAAACATTGTGCCAAACCGCCGCAAAACCTAAAGGCGCAATGTTTTGCCCTTGTCTTGTCACCCGTTTGTGTC
GCGCTTCCGCAACCACAGCACCAGCATCCCACACCACTAAGCCCTCGCATGCGCCTGAGCCACAAAAGAATAAGAGACGCAAGCAGACTGGGGGCAGATATCCACCACCA
GCTGCAAGGATCCCTCAATCTACTAAATTAGCGCAGGAAAGCACTATCTGCGTCCAACCTCAGGGATCCTTGCCGCAATCGCAAGAAAACTTGCCTCCACCTCCACCACC
ATCACCACCCACTGATTTGAACCCACCTTCACCGCAGCCCACTGAAGACTTGCGACCGGAGGAGGTTTTCGAAGAACCTCTACCTAGTCCTCCTCGCAATAATGAAGTTC
CTGCTCCAACGGCAACGCCGCACGAAACAGTTTCTGAGACCACAAGACAGGATGTGCCTGATCTAACCCTTGATGTAGACGAAGCTCTGATCTTTTCCCAGATGCGGCAG
ATACTTCAAGAAGTTATTCAGCCCCTGAAACAGCAGCAAGAAAGGTTGTGCCAACAGCAGGAGTTGCTGCGCAAACAACAGTTCGAATTATCGCAAAAGGTCAACGACTT
AGTCCTTTTCCTCATGCGATGGACTGAAAGCTTTGGTCGCTTGCATGTCAGGCCCAATTTGTTTGCGCGGCCAGCTGGACAACAAAGACCTCCAGGCACAGGCCCGTCTC
CAGTGCGTGGAACCATGCCTCCACCTGCGCCAAGGGACCCAAGAGCACCTCCACCGCCACCACCGCAGGAATAG
Protein sequenceShow/hide protein sequence
MLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEDDVRWLHAIFRTELAGGPGGGVSGYADDAPPSSPKVEGPHRDVIISSDEEHDNRQNDDRIEEDEPEVIDREE
TIESLEAPLTDTNTTEVLNVTPLDISTFNIQSVNLQPAQNILGSRNLTPFSSPFPSVSILPPPNSSTALALNTTPSSSSTSPTVSISLPPSTSTSPALPQFSEQQIAAWN
SLLGELGEEGERIRQREERERTMTKETGRKAAAEENAAKERESSSKQAEDPTAADIAATNLAVIAAAMEVEISEPEDELPLTRRRNIQSTGVVIREPSERPAVALSKKRK
APTASKGKEKLGASKEKEGNNWGKFQEDRGFSCALPQSMTEQITQRRWEAVCENPRNYAPALLRDIPNAEGNALLDCLDNDFLKAVLNAVARPGATWVGQGAARTLKSQL
LDFKATCWMHWVKNRIMPTTHDATLTLQRVILVYCIMRGSPIDLGQILVETLCQTAAKPKGAMFCPCLVTRLCRASATTAPASHTTKPSHAPEPQKNKRRKQTGGRYPPP
AARIPQSTKLAQESTICVQPQGSLPQSQENLPPPPPPSPPTDLNPPSPQPTEDLRPEEVFEEPLPSPPRNNEVPAPTATPHETVSETTRQDVPDLTLDVDEALIFSQMRQ
ILQEVIQPLKQQQERLCQQQELLRKQQFELSQKVNDLVLFLMRWTESFGRLHVRPNLFARPAGQQRPPGTGPSPVRGTMPPPAPRDPRAPPPPPPQE